Pre_GI: BLASTP Hits

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Query: NC_009439:4734237:4737613 Pseudomonas mendocina ymp, complete genome

Start: 4737613, End: 4738593, Length: 981

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016830:6499234:650119765011976502162966Pseudomonas fluorescens F113 chromosome, complete genomeSsuA protein4e-132471
NC_016023:1839503:183950318395031840489987Bacillus coagulans 36D1 chromosome, complete genomealiphatic sulfonates family ABC transporter periplasmic ligand-binding protein4e-87321
NC_009659:1129066:114738211473821148344963Janthinobacterium sp. Marseille chromosome, complete genomesulfonate ABC transporter periplasmic sulfonate-binding protein SsuA1e-83310
NC_016816:1970189:197217019721701973117948Pantoea ananatis LMG 5342, complete genomealiphatic sulfonate ABC transporter substrate-binding protein6e-82304
NC_009439:4734237:474938547493854750377993Pseudomonas mendocina ymp, complete genomealiphatic sulfonate ABC transporter periplasmic ligand-binding protein2e-78292
NC_010512:734834:750846750846751817972Burkholderia cenocepacia MC0-3 chromosome 3, complete sequencealiphatic sulfonates family ABC transporter, periplsmic ligand-binding protein8e-75280
NC_008544:348500:364819364819365790972Burkholderia cenocepacia HI2424 chromosome 3, complete sequencealiphatic sulfonates family ABC transporter, periplsmic ligand-binding protein3e-74278
NC_021066:2197490:219653121965312197493963Raoultella ornithinolytica B6, complete genomealiphatic sulfonate ABC transporter substrate-binding protein3e-74278
NC_008062:370902:386999386999387970972Burkholderia cenocepacia AU 1054 chromosome 3, complete sequenceABC transporter, substrate-binding protein, aliphatic sulphonates4e-74278
NC_008392:542000:543030543030544001972Burkholderia cepacia AMMD chromosome 3, complete sequencealiphatic sulfonates family ABC transporter, periplsmic ligand-binding protein2e-73276
NC_007509:3668:487648765847972Burkholderia sp. 383 chromosome 3, complete sequenceABC transporter, substrate-binding protein, aliphatic sulphonates5e-73275
NC_007509:1383013:487648765847972Burkholderia sp. 383 chromosome 3, complete sequenceABC transporter, substrate-binding protein, aliphatic sulphonates5e-73275
NC_014121:2745097:274413827441382745100963Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completealkanesulfonate transporter substrate-binding subunit2e-72272
NC_016816:1970189:1970189197018919720751887Pantoea ananatis LMG 5342, complete genomeFis family sigma-54 specific transcriptional regulator5e-71268
NC_004578:2671508:267355826735582674532975Pseudomonas syringae pv. tomato str. DC3000, complete genomeABC transporter, periplasmic substrate-binding protein, aliphatic sulfonates family3e-67255
NC_013510:517878:534199534199535191993Thermomonospora curvata DSM 43183, complete genomealiphatic sulfonates family ABC transporter, periplasmic ligand-binding protein2e-50199
NC_016604:2944555:294455529445552945532978Mycobacterium rhodesiae NBB3 chromosome, complete genomeABC transporter, substrate-binding protein, aliphatic sulfonates family9e-39160
NC_012791:4079062:409435240943524095317966Variovorax paradoxus S110 chromosome 1, complete genomealiphatic sulfonates family ABC transporter, periplsmic ligand-binding protein4e-37155
NC_010581:561579:581203581203582177975Beijerinckia indica subsp. indica ATCC 9039, complete genomealiphatic sulfonates family ABC transporter, periplsmic ligand-binding protein9e-36150
NC_010725:5217260:523224952322495233190942Methylobacterium populi BJ001, complete genomealiphatic sulfonates family ABC transporter, periplsmic ligand-binding protein5e-35148
NC_013406:1217385:126499712649971265896900Paenibacillus sp. Y412MC10 chromosome, complete genomealiphatic sulfonates family ABC transporter periplasmic ligand-binding protein5e-35148
NC_009485:3461051:346335634633563464297942Bradyrhizobium sp. BTAi1 chromosome, complete genomealkanesulfonate ABC transporter substrate binding protein8e-33141
NC_009439:4734237:474664147466414747633993Pseudomonas mendocina ymp, complete genomealiphatic sulfonate ABC transporter periplasmic ligand-binding protein1e-32140
NC_019673:9084045:9099799909979991008601062Saccharothrix espanaensis DSM 44229 complete genomehypothetical protein3e-32139
NC_010505:1205747:120989612098961210894999Methylobacterium radiotolerans JCM 2831, complete genomealiphatic sulfonates family ABC transporter, periplsmic ligand-binding protein6e-32138
NC_021182:4186515:4198028419802841990291002Clostridium pasteurianum BC1, complete genomeABC transporter, substrate-binding protein, aliphatic sulfonates family8e-32137
NC_008060:1346581:136220513622051363194990Burkholderia cenocepacia AU 1054 chromosome 1, complete sequenceABC nitrate/sulfonate/bicarbonate transporter, periplasmic ligand binding protein4e-30132
NC_008544:818730:820796820796821785990Burkholderia cenocepacia HI2424 chromosome 3, complete sequenceABC nitrate/sulfonate/bicarbonate transporter, periplasmic ligand binding protein4e-30132
NC_012791:4079062:410154141015414102530990Variovorax paradoxus S110 chromosome 1, complete genomeextracellular solute-binding protein family 32e-29130
NC_007952:444616:4446164446164456201005Burkholderia xenovorans LB400 chromosome 2, complete sequenceABC sulfonate transporter, periplasmic ligand binding protein1e-29130
NC_007509:644000:648999648999649997999Burkholderia sp. 383 chromosome 3, complete sequenceABC nitrate/sulfonate/bicarbonate transporter, periplasmic ligand binding protein1e-29130
NC_020064:3998715:403051240305124031486975Serratia marcescens FGI94, complete genomeABC transporter, substrate-binding protein, aliphatic sulfonates family2e-29129
NC_020064:3998715:402387240238724024816945Serratia marcescens FGI94, complete genomeABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component3e-29129
NC_013406:1217385:126284012628401263826987Paenibacillus sp. Y412MC10 chromosome, complete genomealiphatic sulfonates family ABC transporter periplasmic ligand-binding protein3e-26119
NC_010581:561579:5789225789225799471026Beijerinckia indica subsp. indica ATCC 9039, complete genomeABC transporter, periplasmic substrate-binding protein, aliphatic sulfonates family, putative1e-24114
NC_007907:2830574:2837069283706928380701002Desulfitobacterium hafniense Y51, complete genomehypothetical protein2e-23110
NC_020291:1535402:1552909155290915539551047Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomenitrate/sulfonate/bicarbonate ABC transport system substrate binding protein SsuA9e-23107
NC_018664:2638102:2645472264547226465121041Clostridium acidurici 9a chromosome, complete genomeABC transporter periplasmic aliphatic sulfonates-binding protein SsuA2e-1584
NC_020291:4246500:4268423426842342694631041Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genometaurine-binding periplasmic protein TauA1e-1480.5
NC_014733:107394:1293661293661304691104Methylovorus sp. MP688 chromosome, complete genomesulfonate ABC transporter, periplasmic sulfonate-binding protein ssua4e-1479
NC_010296:2695186:2707043270704327090612019Microcystis aeruginosa NIES-843, complete genomehypothetical protein1e-1377.8
NC_015136:1301576:1324358132435813254251068Burkholderia sp. CCGE1001 chromosome 1, complete sequencenitrate/sulfonate/bicarbonate ABC transporter substrate-binding protein1e-1377.4
NC_015172:1002872:1004285100428510052951011Syntrophobotulus glycolicus DSM 8271 chromosome, complete genomeextracellular solute-binding protein family 31e-1377.4
NC_007644:469181:4691814691814702241044Moorella thermoacetica ATCC 39073, complete genomeABC transporter, substrate-binding protein, aliphatic sulphonates1e-1377.4
NC_015186:2197236:222039022203902221358969Acidiphilium multivorum AIU301, complete genomeputative ABC transporter substrate-binding protein1e-1377.4
NC_016514:891772:931952931952932914963Enterobacter cloacae EcWSU1 chromosome, complete genomeTaurine-binding periplasmic protein3e-1272.8
NC_018750:7653000:7675312767531276766731362Streptomyces venezuelae ATCC 10712, complete genomeATP transporter periplasmic binding protein4e-1272.4
NC_015687:95918:1162811162811173871107Clostridium acetobutylicum DSM 1731 chromosome, complete genomesulfate ABC transporter periplasmic-binding protein8e-1271.6
NC_003030:95918:1162811162811173871107Clostridium acetobutylicum ATCC 824, complete genomeABC-type probable sulfate transporter, periplasmic binding protein8e-1271.6
NC_015589:870804:8831768831768841981023Desulfotomaculum ruminis DSM 2154 chromosome, complete genomefamily 3 extracellular solute-binding protein1e-1170.9
NC_015856:3170771:3170771317077131721831413Collimonas fungivorans Ter331 chromosome, complete genomenitrate ABC transporter periplasmic nitrate-binding protein1e-1170.9
NC_008027:3677500:3685745368574536868121068Pseudomonas entomophila L48, complete genomeABC transporter, periplasmic sulfonate-binding protein1e-1170.9
NC_015565:1163148:1165148116514811661881041Desulfotomaculum carboxydivorans CO-1-SRB chromosome, completealiphatic sulfonates family ABC transporter periplasmic ligand-binding protein2e-1170.5
NC_008596:1302000:1302007130200713034641458Mycobacterium smegmatis str. MC2 155, complete genomeABC transporter substrate-binding protein2e-1170.1
NC_012988:4075429:4076301407630140777431443Methylobacterium extorquens DM4, complete genomeABC transporter substrate-binding protein3e-1169.7
NC_012925:191501:2069002069002079311032Streptococcus suis P1/7, complete genomeextracellular solute binding protein8e-1168.2
NC_014640:4193193:4209706420970642108151110Achromobacter xylosoxidans A8 chromosome, complete genomeABC sulfate ester transporter periplasmic ligand binding protein1e-1067.8
NC_011757:1246000:128058712805871281543957Methylobacterium chloromethanicum CM4, complete genomeNMT1/THI5 like domain protein2e-1067
NC_015565:1163148:1171741117174111727751035Desulfotomaculum carboxydivorans CO-1-SRB chromosome, completealiphatic sulfonates family ABC transporter periplasmic ligand-binding protein2e-1066.6
NC_015565:1163148:1169787116978711707941008Desulfotomaculum carboxydivorans CO-1-SRB chromosome, completealiphatic sulfonates family ABC transporter periplasmic ligand-binding protein4e-1065.9
NC_013421:4714478:4752432475243247534391008Pectobacterium wasabiae WPP163, complete genomeNMT1/THI5 like domain protein6e-1065.1
NC_010510:409469:4233354233354248071473Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01, completeABC transporter substrate-binding protein8e-1064.7
NC_014121:2247913:2249519224951922505771059Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completeputative ABC transporter, periplasmic protein1e-0964.3
NC_015172:951550:9572569572569583621107Syntrophobotulus glycolicus DSM 8271 chromosome, complete genomealiphatic sulfonates family ABC transporter, periplasmic ligand-binding protein2e-0963.9
NC_018607:290500:309773309773310753981Brachyspira pilosicoli B2904 chromosome, complete genomenitrate/sulfonate/bicarbonate ABC transporter2e-0963.9
NC_015172:1429266:1441303144130314423431041Syntrophobotulus glycolicus DSM 8271 chromosome, complete genomeextracellular solute-binding protein family 33e-0962.8
NC_012225:345704:353092353092354075984Brachyspira hyodysenteriae WA1, complete genomeABC-type nitrate/sulfonate/bicarbonate transport system3e-0962.8
NC_011832:1148859:1173676117367611747491074Candidatus Methanosphaerula palustris E1-9c, complete genomeNMT1/THI5 like domain protein5e-0962.4
NC_015942:63440:7313173131744771347Acidithiobacillus ferrivorans SS3 chromosome, complete genomeABC transporter sulfonate/nitrate transport system substrate-binding protein4e-0962.4
NC_009717:271385:2854382854382864481011Xanthobacter autotrophicus Py2 plasmid pXAUT01, complete sequenceABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein5e-0962
NC_013894:672840:680907680907681881975Thermocrinis albus DSM 14484 chromosome, complete genomealiphatic sulfonates family ABC transporter, periplasmic ligand-binding protein9e-0961.2
NC_015259:1512563:152982515298251530805981Polymorphum gilvum SL003B-26A1 chromosome, complete genomeAliphatic sulfonate ABC transporter substrate-binding protein2e-0860.5
NC_015275:521436:5325635325635336241062Clostridium lentocellum DSM 5427 chromosome, complete genomealiphatic sulfonates family ABC transporter, periplasmic ligand-binding protein3e-0859.3
NC_021066:3028421:3027357302735730284241068Raoultella ornithinolytica B6, complete genomeNMT1/THI5 like domain-containing protein7e-0858.5
NC_009515:1481051:149339314933931494343951Methanobrevibacter smithii ATCC 35061, complete genomenitrate/sulfonate/bicarbonate ABC transporter, substrate-binding component, TauA7e-0858.2
NC_018607:290500:3133753133753143821008Brachyspira pilosicoli B2904 chromosome, complete genomealiphatic sulfonates ABC transporter substrate-binding protein1e-0757.8
NC_014377:1298806:130369013036901304661972Thermosediminibacter oceani DSM 16646 chromosome, complete genomeextracellular solute-binding protein family 32e-0756.6
NC_011832:1148859:1163621116362111647181098Candidatus Methanosphaerula palustris E1-9c, complete genomeNMT1/THI5 like domain protein2e-0756.6
NC_007517:1107408:1109967110996711110221056Geobacter metallireducens GS-15, complete genomeABC transporter, substrate-binding protein, aliphatic sulphonates3e-0756.2
NC_007712:3629358:363191636319163632731816Sodalis glossinidius str. 'morsitans', complete genomehypothetical protein4e-0755.8
NC_013716:1298932:1300723130072313017901068Citrobacter rodentium ICC168, complete genomeABC transporter, periplasmic binding component5e-0755.5
NC_013520:1936209:194376619437661944719954Veillonella parvula DSM 2008, complete genometwin-arginine translocation pathway signal5e-0755.5
NC_011894:2359128:2359128235912823601501023Methylobacterium nodulans ORS 2060, complete genomeNMT1/THI5 like domain protein1e-0654.3
NC_002678:7004370:7030549703054970315771029Mesorhizobium loti MAFF303099, complete genomehypothetical protein1e-0653.9
NC_012225:345704:3568363568363578491014Brachyspira hyodysenteriae WA1, complete genomeABC-type nitrate/sulfonate/bicarbonate transport system3e-0653.1
NC_014910:1050706:106286210628621063722861Alicycliphilus denitrificans BC chromosome, complete genomeextracellular solute-binding protein family 34e-0652.8
NC_014614:86213:9226792267933101044Clostridium sticklandii, complete genomeexported protein of unknown function5e-0652
NC_007958:2423335:2437866243786624389361071Rhodopseudomonas palustris BisB5, complete genomeputative taurine transport system protein6e-0652
NC_010085:1174917:1176884117688411779091026Nitrosopumilus maritimus SCM1, complete genomealiphatic sulfonates family ABC transporter, periplsmic ligand-binding protein7e-0651.6
NC_017192:1841987:1870147187014718712231077Arcobacter sp. L, complete genomeABC transporter substrate binding component8e-0651.6