Pre_GI: BLASTP Hits

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Query: NC_009439:3535152:3553849 Pseudomonas mendocina ymp, complete genome

Start: 3553849, End: 3554721, Length: 873

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012731:2302974:233146423314642332342879Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomeAraC family transcriptional regulator5e-77287
NC_019744:20500:309113091131894984Cylindrospermum stagnale PCC 7417 plasmid pCYLST.02, completeDNA-binding domain-containing protein, AraC-type3e-57221
NC_010628:675445:690930690930691910981Nostoc punctiforme PCC 73102, complete genometranscriptional regulator, AraC family1e-55216
NC_015410:2258800:228399222839922284939948Pseudomonas mendocina NK-01 chromosome, complete genomeAraC family transcriptional regulator4e-54211
NC_010501:3448389:347064834706483471556909Pseudomonas putida W619, complete genometranscriptional regulator, AraC family7e-51201
NC_010501:3013103:302656130265613027469909Pseudomonas putida W619, complete genometranscriptional regulator, AraC family8e-51200
NC_008686:95326:101268101268102167900Paracoccus denitrificans PD1222 chromosome 1, complete sequenceAraC-type transcriptional regulator domain protein3e-50199
NC_011769:3712497:371977637197763720675900Desulfovibrio vulgaris str. 'Miyazaki F', complete genometranscriptional regulator, AraC family1e-47190
NC_011146:4505821:451816645181664519101936Geobacter bemidjiensis Bem, complete genometranscriptional regulator, AraC family1e-47190
NC_013501:176073:176892176892177815924Rhodothermus marinus DSM 4252, complete genometranscriptional regulator, AraC family5e-47187
NC_016002:2825017:284537228453722846346975Pseudogulbenkiania sp. NH8B, complete genomeAraC family transcriptional regulator2e-46186
NC_002516:2222896:224030222403022241291990Pseudomonas aeruginosa PAO1, complete genomeprobable transcriptional regulator2e-45182
NC_008027:2909000:291245129124512913365915Pseudomonas entomophila L48, complete genometranscription regulator, AraC family3e-45182
NC_008609:112340:128282128282129244963Pelobacter propionicus DSM 2379, complete genometranscriptional regulator, AraC family4e-45181
NC_012988:670101:672063672063672974912Methylobacterium extorquens DM4, complete genomeAraC family transcriptional regulator1e-44180
NC_012660:4669500:467927446792744680179906Pseudomonas fluorescens SBW25 chromosome, complete genomeputative AraC family transcriptional regulator2e-44179
NC_013592:2968500:299110129911012992003903Dickeya dadantii Ech586, complete genometranscriptional regulator, AraC family7e-44177
NC_005966:1832066:184087018408701841769900Acinetobacter sp. ADP1, complete genomeputative transcription regulator (AraC family)2e-43176
NC_014479:2505823:251979825197982520709912Bacillus subtilis subsp. spizizenii str. W23 chromosome, completeputative AraC-like transcriptional regulator2e-43176
NC_009486:1737703:174171917417191742618900Thermotoga petrophila RKU-1 chromosome, complete genomeAraC-like transcriptional regulator6e-43174
NC_010322:3315024:333232733323273333292966Pseudomonas putida GB-1 chromosome, complete genomeAraC family transcriptional regulator6e-43174
NC_020409:1173796:119140111914011192339939Desulfovibrio piezophilus str. nov C1TLV30 chromosome, completeTranscriptional regulator, AraC family2e-42172
NC_016935:4367000:437787743778774378845969Paenibacillus mucilaginosus 3016 chromosome, complete genomeAraC family transcriptional regulator1e-41170
NC_011146:896000:914844914844915761918Geobacter bemidjiensis Bem, complete genometranscriptional regulator, AraC family2e-41169
NC_003295:2787371:279676927967692797659891Ralstonia solanacearum GMI1000, complete genomePROBABLE TRANSCRIPTIONAL REGULATOR TRANSCRIPTION REGULATOR PROTEIN4e-41168
NC_007509:71954:1023091023091033731065Burkholderia sp. 383 chromosome 3, complete sequencetranscriptional regulator, AraC family5e-41168
NC_016935:2347691:242517924251792426072894Paenibacillus mucilaginosus 3016 chromosome, complete genomearac-like transcriptional regulator1e-40167
NC_014258:355845:375318375318376244927Pantoea vagans C9-1 plasmid pPag3, complete sequenceHTH-type transcriptional Activator RhaS2e-40166
NC_016845:2655512:266169226616922662606915Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,putative ARAC-type regulatory protein3e-40165
NC_009648:1882500:188609218860921887006915Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeputative ARAC-type regulatory protein3e-40165
NC_008544:348500:3521083521083531241017Burkholderia cenocepacia HI2424 chromosome 3, complete sequencetranscriptional regulator, AraC family9e-40164
NC_008062:370902:3742883742883753041017Burkholderia cenocepacia AU 1054 chromosome 3, complete sequencetranscriptional regulator, AraC family9e-40164
NC_003295:2787371:280237428023742803273900Ralstonia solanacearum GMI1000, complete genomePROBABLE TRANSCRIPTION REGULATOR PROTEIN5e-40164
NC_010512:734834:7382207382207392361017Burkholderia cenocepacia MC0-3 chromosome 3, complete sequencetranscriptional regulator, AraC family1e-39163
NC_012691:2097287:211617421161742117124951Tolumonas auensis DSM 9187, complete genometranscriptional regulator, AraC family2e-39163
NC_013892:2108175:214256721425672143490924Xenorhabdus bovienii SS-2004 chromosome, complete genomeAraC family transcriptional regulator2e-39162
NC_016830:4639388:464485146448514645618768Pseudomonas fluorescens F113 chromosome, complete genomearaC family transcriptional regulator2e-39162
NC_007509:1383013:1387020138702013880361017Burkholderia sp. 383 chromosome 3, complete sequencetranscriptional regulator, AraC family4e-39161
NC_015589:1439794:144599514459951446888894Desulfotomaculum ruminis DSM 2154 chromosome, complete genomeAraC-type transcriptional regulator domain-containing protein1e-38160
NC_003295:659837:672486672486673451966Ralstonia solanacearum GMI1000, complete genomePROBABLE TRANSCRIPTION REGULATOR PROTEIN1e-38160
NC_014307:2735934:274521727452172746131915Ralstonia solanacearum CFBP2957 chromosome, complete genomeAraC family transcriptional regulator1e-38160
NC_007952:1416000:143102014310201431988969Burkholderia xenovorans LB400 chromosome 2, complete sequenceTranscriptional regulator, AraC family4e-38158
NC_010814:155834:168011168011168946936Geobacter lovleyi SZ, complete genometranscriptional regulator, AraC family5e-38158
NC_014618:2705769:271469127146912715611921Enterobacter cloacae SCF1 chromosome, complete genomeAraC family transcriptional regulator8e-37154
NC_005966:1832066:184434818443481845091744Acinetobacter sp. ADP1, complete genomeputative transcriptional regulator (AraC family)4e-36151
NC_008544:348500:3658523658523669731122Burkholderia cenocepacia HI2424 chromosome 3, complete sequencetranscriptional regulator, AraC family5e-36151
NC_008027:2909000:290913229091322910049918Pseudomonas entomophila L48, complete genometranscriptional regulator, AraC family1e-35150
NC_021066:1712905:172143117214311722351921Raoultella ornithinolytica B6, complete genometranscriptional regulator, AraC family protein1e-35150
NC_010512:734834:7518797518797530001122Burkholderia cenocepacia MC0-3 chromosome 3, complete sequencetranscriptional regulator, AraC family8e-36150
NC_008062:370902:388032388032389012981Burkholderia cenocepacia AU 1054 chromosome 3, complete sequencetranscriptional regulator, AraC family7e-36150
NC_015856:764651:780275780275781222948Collimonas fungivorans Ter331 chromosome, complete genomeAraC family transcriptional regulator3e-35149
NC_015379:908904:930689930689931624936Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,Putative transcription factor, AraC family4e-35148
NC_008010:222516:2251542251542262511098Deinococcus geothermalis DSM 11300 plasmid 1, complete sequencetranscriptional regulator, AraC family4e-35148
NC_009092:2282437:229102922910292291928900Shewanella loihica PV-4, complete genometranscriptional regulator, AraC family8e-35147
NC_016830:952342:977465977465978373909Pseudomonas fluorescens F113 chromosome, complete genomearaC family transcriptional regulator9e-35147
NC_021066:1712905:173761317376131738563951Raoultella ornithinolytica B6, complete genomehypothetical protein2e-34146
NC_010338:426388:446357446357447268912Caulobacter sp. K31, complete genometranscriptional regulator, AraC family7e-34144
NC_014306:642152:656524656524657459936Erwinia billingiae Eb661, complete genomeTranscriptional regulator, AraC family8e-34144
NC_012796:129500:129892129892130776885Desulfovibrio magneticus RS-1, complete genomeAraC family transcriptional regulator1e-33143
NC_011071:1877500:189908918990891900039951Stenotrophomonas maltophilia R551-3, complete genometranscriptional regulator, AraC family2e-33143
NC_015224:3820338:385490238549023855795894Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,AraC family transcription regulator1e-32140
NC_008800:3955284:397664139766413977534894Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,AraC family transcription regulator2e-32139
NC_002516:1474000:149701214970121497977966Pseudomonas aeruginosa PAO1, complete genomeprobable transcriptional regulator2e-32139
NC_015424:4251369:425136942513694252271903Aeromonas veronii B565 chromosome, complete genomeputative HTH-type transcriptional regulator YqhC4e-32138
NC_017168:341233:363240363240364133894Yersinia pestis A1122 chromosome, complete genomeAraC-family regulatory protein7e-32137
NC_017265:3724500:374583037458303746723894Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,putative DNA-binding transcriptional regulator8e-32137
NC_006155:3992818:401925140192514020144894Yersinia pseudotuberculosis IP 32953, complete genomeAraC-family regulatory protein7e-32137
NC_004088:3859173:388047038804703881363894Yersinia pestis KIM, complete genomeAraC-type regulatory protein7e-32137
NC_010634:3905369:393070839307083931601894Yersinia pseudotuberculosis PB1/+, complete genomeAraC family transcriptional regulator7e-32137
NC_005810:3333000:333311133331113334004894Yersinia pestis biovar Microtus str. 91001, complete genomeAraC family transcription regulator7e-32137
NC_008150:3430000:345135934513593452252894Yersinia pestis Antiqua, complete genomeAraC-family regulatory protein7e-32137
NC_008149:650706:650706650706651599894Yersinia pestis Nepal516, complete genomeAraC-family regulatory protein7e-32137
NC_003143:741169:741169741169742062894Yersinia pestis CO92, complete genomeAraC-family regulatory protein7e-32137
NC_009381:522731:522731522731523624894Yersinia pestis Pestoides F chromosome, complete genomeAraC family transcription regulator7e-32137
NC_009708:692508:692508692508693401894Yersinia pseudotuberculosis IP 31758 chromosome, complete genomeAraC family transcriptional regulator7e-32137
NC_014029:792719:792719792719793612894Yersinia pestis Z176003 chromosome, complete genomeAraC-family regulatory protein7e-32137
NC_017154:734875:734875734875735768894Yersinia pestis D106004 chromosome, complete genomeAraC-family regulatory protein7e-32137
NC_017160:737000:737054737054737947894Yersinia pestis D182038 chromosome, complete genomeAraC-family regulatory protein7e-32137
NC_015690:1818333:189580918958091896324516Paenibacillus mucilaginosus KNP414 chromosome, complete genomeAraC family transcriptional regulator6e-31134
NC_014541:1617678:163751416375141638503990Ferrimonas balearica DSM 9799 chromosome, complete genometranscriptional regulator, AraC family2e-29129
NC_016582:9551123:955112395511239551986864Streptomyces bingchenggensis BCW-1 chromosome, complete genomeAraC family transcription regulator1e-27123
NC_015312:848403:857726857726858697972Pseudonocardia dioxanivorans CB1190 chromosome, complete genomeAraC family transcriptional regulator1e-25117
NC_015957:1070500:109744310974431098348906Streptomyces violaceusniger Tu 4113 chromosome, complete genomeAraC family transcriptional regulator2e-24113
NC_014842:19411:238252382524475651Pantoea sp. At-9b plasmid pPAT9B05, complete sequence2e-24112
NC_015381:3091500:309659930965993097009411Burkholderia gladioli BSR3 chromosome 1, complete sequenceAraC family transcriptional regulator6e-21101
NC_005966:1832066:184589118458911846157267Acinetobacter sp. ADP1, complete genomeputative transcriptional regulator (AraC family)9e-1787.4
NC_011751:1770376:179158517915851791839255Escherichia coli UMN026 chromosome, complete genomeputative HTH-type transcriptional regulator yqhC (fragment)5e-1685.1
NC_005966:1832066:184523918452391845898660Acinetobacter sp. ADP1, complete genomeputative transcriptional regulator (AraC family)3e-1272.4
NC_012881:2957309:297100529710052971886882Desulfovibrio salexigens DSM 2638, complete genometranscriptional regulator, AraC family4e-1065.5
NC_007963:3225306:324604832460483247004957Chromohalobacter salexigens DSM 3043, complete genometranscriptional regulator, AraC family4e-1065.5
NC_015733:2581324:2615728261572826167381011Pseudomonas putida S16 chromosome, complete genomeputative transcriptional regulator7e-1064.7
NC_011365:1103927:111400311140031114950948Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genomeAraC family transcriptional regulator9e-1064.3
NC_015381:3091500:3097693309769330986941002Burkholderia gladioli BSR3 chromosome 1, complete sequenceAraC family transcriptional regulator1e-0963.9
NC_015136:912276:935323935323936282960Burkholderia sp. CCGE1001 chromosome 1, complete sequenceAraC family transcriptional regulator3e-0962.8
NC_002655:1966464:197340919734091973612204Escherichia coli O157:H7 EDL933, complete genomehypothetical protein3e-0962.4
NC_014323:3895376:389653238965323897413882Herbaspirillum seropedicae SmR1 chromosome, complete genomeAraC family transcription regulator protein8e-0961.2
NC_008596:4043213:407143340714334072320888Mycobacterium smegmatis str. MC2 155, complete genomeMmsAB operon regulatory protein1e-0757.4
NC_010676:3009980:301668130166813017520840Burkholderia phytofirmans PsJN chromosome 2, complete sequencetranscriptional regulator, AraC family1e-0757.4
NC_014217:1352777:135437213543721355301930Starkeya novella DSM 506 chromosome, complete genometranscriptional regulator, AraC family1e-0757.4
NC_014118:987889:992476992476993264789Burkholderia sp. CCGE1002 chromosome chromosome 2, completetranscriptional regulator, AraC family2e-0756.6
NC_014840:76232:754807548076235756Pantoea sp. At-9b plasmid pPAT9B03, complete sequencetranscriptional regulator, AraC family3e-0755.8
NC_016627:1485799:152182415218241522717894Clostridium clariflavum DSM 19732 chromosome, complete genomeDNA-binding domain-containing protein3e-0755.8
NC_019978:2532640:253574925357492536591843Halobacteroides halobius DSM 5150, complete genomeDNA-binding domain-containing protein, AraC-type4e-0755.5
NC_014837:387868:409063409063410022960Pantoea sp. At-9b chromosome, complete genomeAraC family transcriptional regulator4e-0755.5
NC_015567:1206727:1238900123890012399371038Serratia sp. AS9 chromosome, complete genomeAraC family transcriptional regulator5e-0755.1
NC_015566:1206500:1238715123871512397521038Serratia sp. AS12 chromosome, complete genomeAraC family transcriptional regulator5e-0755.1
NC_014973:243000:247572247572248330759Geobacter sp. M18 chromosome, complete genometwo component AraC family transcriptional regulator8e-0754.7
NC_014366:1663034:1664567166456716656041038Gamma proteobacterium HdN1, complete genometranscriptional regulator, AraC family9e-0754.3
NC_015690:1542061:156474015647401565588849Paenibacillus mucilaginosus KNP414 chromosome, complete genomeAraC family transcriptional regulator1e-0653.9
NC_016935:2069562:209206820920682092916849Paenibacillus mucilaginosus 3016 chromosome, complete genomeAraC family transcriptional regulator1e-0653.9
NC_008686:1439328:1461579146157914625801002Paracoccus denitrificans PD1222 chromosome 1, complete sequencehelix-turn-helix- domain containing protein, AraC type2e-0653.5
NC_014924:1701952:171627217162721717261990Pseudoxanthomonas suwonensis 11-1 chromosome, complete genometranscriptional regulator, AraC family2e-0653.5
NC_014217:4550544:456353645635364564432897Starkeya novella DSM 506 chromosome, complete genometranscriptional regulator, AraC family1e-0653.5
NC_017986:5467279:546819554681955469016822Pseudomonas putida ND6 chromosome, complete genomeAraC family transcriptional regulator2e-0653.1
NC_010501:3448389:346606534660653466964900Pseudomonas putida W619, complete genometranscriptional regulator, AraC family3e-0652.8
NC_016830:952342:9813109813109823381029Pseudomonas fluorescens F113 chromosome, complete genomearaC family transcriptional regulator3e-0652.8
NC_009512:3068495:308791530879153088736822Pseudomonas putida F1, complete genomehelix-turn-helix- domain containing protein, AraC type3e-0652.8
NC_016935:2347691:238530323853032386121819Paenibacillus mucilaginosus 3016 chromosome, complete genomeAraC family transcriptional regulator3e-0652.8
NC_013729:6217500:623254162325416233518978Kribbella flavida DSM 17836, complete genometranscriptional regulator, AraC family4e-0652.4
NC_007952:1587500:1599684159968416007661083Burkholderia xenovorans LB400 chromosome 2, complete sequencetranscriptional regulator, AraC family5e-0652
NC_002505:168532:197873197873198685813Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, completetranscriptional regulator, AraC/XylS family5e-0652
NC_016944:168530:197883197883198695813Vibrio cholerae IEC224 chromosome I, complete sequenceAraC/XylS family transcriptional regulator5e-0652
NC_016445:2593800:262314126231412623944804Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, completeAraC/XylS family transcriptional regulator5e-0652
NC_014008:669170:679249679249680019771Coraliomargarita akajimensis DSM 45221 chromosome, complete genometranscriptional regulator, AraC family4e-0652
NC_012721:2556160:2556160255616025571941035Burkholderia glumae BGR1 chromosome 2, complete genomeTranscriptional regulator, AraC family protein6e-0651.6
NC_008702:1432952:1437635143763514386391005Azoarcus sp. BH72, complete genomeputative AraC-family transcriptional regulator9e-0651.2