Pre_GI: BLASTP Hits

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Query: NC_009439:3535152:3552363 Pseudomonas mendocina ymp, complete genome

Start: 3552363, End: 3552797, Length: 435

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009512:2238437:224519822451982245629432Pseudomonas putida F1, complete genomeglutathione-dependent formaldehyde-activating, GFA5e-51199
NC_010511:1074557:110940511094051109818414Methylobacterium sp. 4-46 chromosome, complete genomeglutathione-dependent formaldehyde-activating protein9e-1579
NC_012559:731859:738606738606739025420Laribacter hongkongensis HLHK9, complete genomeGlutathione-dependent formaldehyde-activating, GFA3e-1373.9
NC_007912:909112:916722916722917141420Saccharophagus degradans 2-40, complete genomehypothetical protein8e-1372.4
NC_013194:761166:773034773034773444411Candidatus Accumulibacter phosphatis clade IIA str. UW-1, completeglutathione-dependent formaldehyde-activating GFA9e-1268.9
NC_005085:1096000:110247811024781102891414Chromobacterium violaceum ATCC 12472, complete genomehypothetical protein1e-1168.2
NC_013422:1755875:178796317879631788376414Halothiobacillus neapolitanus c2, complete genomeglutathione-dependent formaldehyde-activating GFA1e-1065.5
NC_014153:2125551:214591921459192146332414Thiomonas intermedia K12 chromosome, complete genomeglutathione-dependent formaldehyde-activating GFA8e-1062.4
NC_014153:2077647:208965720896572090082426Thiomonas intermedia K12 chromosome, complete genomeglutathione-dependent formaldehyde-activating GFA2e-0857.8
NC_012559:731859:739049739049739507459Laribacter hongkongensis HLHK9, complete genomeGlutathione-dependent formaldehyde-activating, GFA3e-0857
NC_007912:4840682:485228048522804852681402Saccharophagus degradans 2-40, complete genomehypothetical protein5e-0856.6
NC_016614:1178000:117811611781161178535420Vibrio sp. EJY3 chromosome 2, complete sequenceglutathione-dependent formaldehyde-activating protein5e-0856.6
NC_014623:7482229:752787075278707528352483Stigmatella aurantiaca DW4/3-1 chromosome, complete genomeglutathione-dependent formaldehyde-activating protein6e-0856.2
NC_015497:3614817:363279836327983633208411Glaciecola agarilytica 4H-3-7+YE-5 chromosome, complete genomeglutathione-dependent formaldehyde-activating GFA1e-0755.1
NC_012691:779826:780153780153780548396Tolumonas auensis DSM 9187, complete genomeglutathione-dependent formaldehyde-activating GFA3e-0753.9
NC_007963:2644930:265543626554362655837402Chromohalobacter salexigens DSM 3043, complete genomeglutathione-dependent formaldehyde-activating, GFA5e-0753.1
NC_007761:241900:260213260213260665453Rhizobium etli CFN 42, complete genomehypothetical protein5e-0753.1
NC_017249:4365935:436869743686974369116420Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein2e-0650.8
NC_017506:971482:995052995052995402351Marinobacter adhaerens HP15 chromosome, complete genomeglutathione-dependent formaldehyde-activating protein2e-0650.8
NC_007645:3756654:377006337700633770482420Hahella chejuensis KCTC 2396, complete genomehypothetical protein3e-0650.4