Pre_GI: BLASTN Hits

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Query: NC_008269:577111 Rhodococcus sp. RHA1 plasmid pRHL1, complete sequence

Start: 577111, End: 595318, Length: 18208

Host Lineage: Rhodococcus jostii; Rhodococcus; Nocardiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This strain was isolated from soil contaminated with gamma-hexachlorocyclohexane (lindane: a toxic insecticide) in Japan. Polychlorinated biphenyl degrading bacterium. Rhodococcus jostii is capable of degrading a wide variety of polychlorinated biphenyls (PCBs), which are toxic compounds produced by industry, and is studied extensively for this reason. This microbe is being examined thoroughly under different environmental conditions in order to better understand metabolic pathways and gene functions.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_007964:2762000*2762000278109919100Nitrobacter hamburgensis X14, complete genome1e-0765.9BLASTN svgBLASTP svg
NC_012522:985679856712209923533Rhodococcus opacus B4, complete genome9e-1279.8BLASTN svgBLASTP svg
NC_008268:36142436142438312821705Rhodococcus sp. RHA1, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_010572:820008200014493162932Streptomyces griseus subsp. griseus NBRC 13350, complete genome8e-0660BLASTN svgBLASTP svg
NC_013595:19649319649322011923627Streptosporangium roseum DSM 43021, complete genome2e-0661.9BLASTN svgBLASTP svg