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Query: NC_008150:1384102:1399331 Yersinia pestis Antiqua, complete genome

Start: 1399331, End: 1399558, Length: 228

Host Lineage: Yersinia pestis; Yersinia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Isolated from a soil sample from the Republic of Congo. Causative agent of plague. Specific virulence factors are encoded within pathogenicity islands (PAIs) that are required for the invasive phenotype associated with Yersinia infections. One key virulence plasmid contained by the three human-specific pathogens is pCD1/pYv, which encodes a type III secretion system for the delivery of virulence proteins that contribute to internalization into the host cell. It is the causative agent of plague (bubonic and pulmonary) a devastating disease which has killed millions worldwide. The organism can be transmitted from rats to humans through the bite of an infected flea or from human-to-human through the air during widespread infection. Yersinia pestis is an extremely pathogenic organism that requires very few numbers in order to cause disease, and is often lethal if left untreated. The organism is enteroinvasive, and can survive and propagate in macrophages prior to spreading systemically throughout the host. Yersinia pestis consists of three biotypes or serovars, Antiqua, Mediavalis, and Orientalis, that are associated with three major pandemics throughout human history. pMT1 encodes a protein, murine toxin, that aids rat-to-human transmission by enhancing survival of the organism in the flea midgut. Yersinia pestis also contains a PAI on the chromosome that is similar to the SPI-2 PAI from Salmonella that allows intracellular survival in the organism.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009708:2537557:2551271255127125526441374Yersinia pseudotuberculosis IP 31758 chromosome, complete genomereplicative DNA helicase5e-39159
NC_010159:2128157:214329621432962143523228Yersinia pestis Angola, complete genome4e-38156
NC_006155:2208686:222051222205122220739228Yersinia pseudotuberculosis IP 32953, complete genome4e-38156
NC_008149:2517538:253547625354762535703228Yersinia pestis Nepal516, complete genomereplicative DNA helicase4e-38156
NC_003143:2101902:211625221162522116479228Yersinia pestis CO92, complete genomereplicative DNA helicase (partial)4e-38156
NC_004088:2691565:270034927003492700576228Yersinia pestis KIM, complete genomehypothetical protein4e-38156
NC_005810:1663672:167282216728221673049228Yersinia pestis biovar Microtus str. 91001, complete genome4e-38156
NC_009381:1414985:141970614197061419933228Yersinia pestis Pestoides F chromosome, complete genome4e-38156
NC_017168:3535786:354453435445343544761228Yersinia pestis A1122 chromosome, complete genomereplicative DNA helicase4e-38156
NC_017265:2306500:232053123205312320758228Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,Replicative DNA helicase4e-38156
NC_011415:2277559:2298822229882223002131392Escherichia coli SE11 chromosome, complete genomehypothetical protein3e-1787
NC_009801:2193000:2212397221239722137881392Escherichia coli E24377A, complete genomehelicase, DnaB family3e-1787
NC_011740:2072173:2106745210674521081211377Escherichia fergusonii ATCC 35469, complete genomeReplicative DNA helicase7e-1579.3
NC_011083:374000:3881703881703895461377Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,replicative DNA helicase1e-1478.6
NC_020418:3133831:3134895313489531362621368Morganella morganii subsp. morganii KT, complete genomehypothetical protein2e-1478.2
NC_011601:2614691:2616264261626426176401377Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomereplicative DNA helicase2e-1477.8
NC_011205:609464:6298886298886312641377Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853replicative DNA helicase2e-1477.8
NC_007946:2625461:2626699262669926280751377Escherichia coli UTI89, complete genomebacteriophage Nil2 gene P DnaB analogue2e-1477.8
NC_016860:364981:3816783816783830541377Salmonella enterica subsp. enterica serovar Typhimurium strreplicative DNA helicase2e-1477.8
NC_013361:3287671:3291987329198732933631377Escherichia coli O26:H11 str. 11368 chromosome, complete genomereplication protein2e-1477.4
NC_016816:1970189:1988213198821319896251413Pantoea ananatis LMG 5342, complete genomeDnaB domain-containing protein helicase domain-containing protein2e-1271.2
NC_014837:2354241:2354241235424123556261386Pantoea sp. At-9b chromosome, complete genomeDnaB domain-containing protein helicase domain-containing protein8e-1268.9
NC_012779:1939747:1954644195464419560261383Edwardsiella ictaluri 93-146, complete genomereplicative DNA helicase2e-1167.8
NC_007384:2933625:2937563293756329390951533Shigella sonnei Ss046, complete genomeputative helicase3e-1167.4
NC_016822:3065426:3068867306886730702581392Shigella sonnei 53G, complete genomereplicative DNA helicase3e-1167
NC_011415:2153243:2155150215515021565411392Escherichia coli SE11 chromosome, complete genomeputative phage helicase8e-1165.9
NC_016809:389561:3907023907023920751374Haemophilus influenzae 10810, complete genomehypothetical protein4e-0857