Pre_GI: BLASTN Hits

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Query: NC_007953:504939 Burkholderia xenovorans LB400 chromosome 3, complete sequence

Start: 504939, End: 529777, Length: 24839

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_015138:69386569386571749823634Acidovorax avenae subsp. avenae ATCC 19860 chromosome, complete4e-27131BLASTN svgBLASTP svg
NC_015138:30224143022414304672924316Acidovorax avenae subsp. avenae ATCC 19860 chromosome, complete4e-27131BLASTN svgBLASTP svg
NC_015138:11430151143015116543022416Acidovorax avenae subsp. avenae ATCC 19860 chromosome, complete4e-27131BLASTN svgBLASTP svg
NC_008752:32176953217695323954921855Acidovorax avenae subsp. citrulli AAC00-1, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_008752:29369332936933297832941397Acidovorax avenae subsp. citrulli AAC00-1, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_008752:1523768*1523768154381320046Acidovorax avenae subsp. citrulli AAC00-1, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_008752:415599*41559944209126493Acidovorax avenae subsp. citrulli AAC00-1, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_008752:35955163595516362337527860Acidovorax avenae subsp. citrulli AAC00-1, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_013093:73773773773776222824492Actinosynnema mirum DSM 43827, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_015376:90393990393993323129293Burkholderia gladioli BSR3 chromosome chromosome 2, complete6e-20107BLASTN svgBLASTP svg
NC_012724:20685882068588209611727530Burkholderia glumae BGR1 chromosome 1, complete genome5e-48200BLASTN svgBLASTP svg
NC_014718:102852*10285212309920248Burkholderia rhizoxinica HKI 454 chromosome, complete genome4e-67264BLASTN svgBLASTP svg
NC_014118:13311641331164135459923436Burkholderia sp. CCGE1002 chromosome chromosome 2, complete2e-115424BLASTN svgBLASTP svg
NC_015565:12835012835015511926770Desulfotomaculum carboxydivorans CO-1-SRB chromosome, complete1e-0869.9BLASTN svgBLASTP svg
NC_013037:5263272*5263272529310829837Dyadobacter fermentans DSM 18053, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_013440:31123403112340313738225043Haliangium ochraceum DSM 14365, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_007274:72979729799468121703Pseudomonas syringae pv. phaseolicola 1448A large plasmid, complete1e-0869.9BLASTN svgBLASTP svg
NC_005773:4028500*4028500405209923600Pseudomonas syringae pv. phaseolicola 1448A, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_010682:28841528841531019821784Ralstonia pickettii 12J chromosome 1, complete sequence1e-54222BLASTN svgBLASTP svg
NC_003155:5163382*5163382518745824077Streptomyces avermitilis MA-4680, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_021177:4124839*4124839415343928601Streptomyces fulvissimus DSM 40593, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_014931:23364652336465236070324239Variovorax paradoxus EPS chromosome, complete genome2e-53218BLASTN svgBLASTP svg
NC_013722:14255881425588144909923512Xanthomonas albilineans, complete genome6e-20107BLASTN svgBLASTP svg