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Query: NC_007953:1043957 Burkholderia xenovorans LB400 chromosome 3, complete sequence

Start: 1043957, End: 1067909, Length: 23953

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.

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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_010625:67048267048270099930518Burkholderia phymatum STM815 plasmid pBPHY01, complete sequence3e-46194BLASTN svgBLASTP svg
NC_010623:19616851961685204159979915Burkholderia phymatum STM815 chromosome 2, complete sequence1e-23119BLASTN svgBLASTP svg
NC_007086:557789*55778958514427356Xanthomonas campestris pv. campestris str. 8004, complete genome2e-22115BLASTN svgBLASTP svg
NC_003902:555699*55569958306027362Xanthomonas campestris pv. campestris str. ATCC 33913, complete2e-22115BLASTN svgBLASTP svg
NC_007508:57000057000058799217993Xanthomonas campestris pv. vesicatoria str. 85-10, complete genome8e-19103BLASTN svgBLASTP svg
NC_007952:32833943283394332059937206Burkholderia xenovorans LB400 chromosome 2, complete sequence5e-1487.7BLASTN svgBLASTP svg
NC_007951:29046442904644294513440491Burkholderia xenovorans LB400 chromosome 1, complete sequence2e-1385.7BLASTN svgBLASTP svg
NC_007908:11084941108494116189953406Rhodoferax ferrireducens T118, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_006349:16305141630514165443823925Burkholderia mallei ATCC 23344 chromosome 2, complete sequence5e-1177.8BLASTN svgBLASTP svg
NC_008835:21336962133696215609922404Burkholderia mallei NCTC 10229 chromosome I, complete sequence5e-1177.8BLASTN svgBLASTP svg
NC_009079:70593170593172828122351Burkholderia mallei NCTC 10247 chromosome I, complete sequence5e-1177.8BLASTN svgBLASTP svg
NC_013235:3812838*3812838384142328586Nakamurella multipartita DSM 44233, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_008314:1955793*1955793197880923017Ralstonia eutropha H16 chromosome 2, complete sequence7e-0763.9BLASTN svgBLASTP svg
NC_014931:25114232511423253417122749Variovorax paradoxus EPS chromosome, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_014931:29496972949697297109921403Variovorax paradoxus EPS chromosome, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_014931:4210029*4210029424439734369Variovorax paradoxus EPS chromosome, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_014931:4234288*4234288426496730680Variovorax paradoxus EPS chromosome, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_014931:55739425573942559409920158Variovorax paradoxus EPS chromosome, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_010524:93319193319195763824448Leptothrix cholodnii SP-6, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_010524:33023983302398332924326846Leptothrix cholodnii SP-6, complete genome3e-0661.9BLASTN svgBLASTP svg