Pre_GI: BLASTN Hits

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Query: NC_007952:3283394 Burkholderia xenovorans LB400 chromosome 2, complete sequence

Start: 3283394, End: 3320599, Length: 37206

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_011992:22797522279752232691047159Acidovorax ebreus TPSY, complete genome5e-18101BLASTN svgBLASTP svg
NC_010552:58294*5829410257344280Burkholderia ambifaria MC40-6 chromosome 2, complete sequence3e-1385.7BLASTN svgBLASTP svg
NC_010552:24547762454776248709932324Burkholderia ambifaria MC40-6 chromosome 2, complete sequence7e-0867.9BLASTN svgBLASTP svg
NC_010515:19009671900967192454423578Burkholderia cenocepacia MC0-3 chromosome 2, complete sequence4e-0661.9BLASTN svgBLASTP svg
NC_008391:86534086534088883923500Burkholderia cepacia AMMD chromosome 2, complete sequence1e-0973.8BLASTN svgBLASTP svg
NC_012721:25561602556160260386447705Burkholderia glumae BGR1 chromosome 2, complete genome1e-1283.8BLASTN svgBLASTP svg
NC_010623:18714921871492194209470603Burkholderia phymatum STM815 chromosome 2, complete sequence1e-0973.8BLASTN svgBLASTP svg
NC_007951:92544292544294860323162Burkholderia xenovorans LB400 chromosome 1, complete sequence01693BLASTN svgBLASTP svg
NC_007951:19289061928906195286323958Burkholderia xenovorans LB400 chromosome 1, complete sequence3e-1695.6BLASTN svgBLASTP svg
NC_007953:35349635349637159918104Burkholderia xenovorans LB400 chromosome 3, complete sequence5e-18101BLASTN svgBLASTP svg
NC_007953:10439571043957106790923953Burkholderia xenovorans LB400 chromosome 3, complete sequence8e-1487.7BLASTN svgBLASTP svg
NC_006138:2683545*2683545273303949495Desulfotalea psychrophila LSv54, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_010524:93319193319195763824448Leptothrix cholodnii SP-6, complete genome3e-87331BLASTN svgBLASTP svg
NC_010524:33023983302398332924326846Leptothrix cholodnii SP-6, complete genome3e-87331BLASTN svgBLASTP svg
NC_016002:20373742037374208061443241Pseudogulbenkiania sp. NH8B, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_009434:3611738*36117383748875137138Pseudomonas stutzeri A1501, complete genome5e-1281.8BLASTN svgBLASTP svg
NC_009434:28147428147430109919626Pseudomonas stutzeri A1501, complete genome5e-1281.8BLASTN svgBLASTP svg
NC_007974:23234362323436234121717782Ralstonia metallidurans CH34 chromosome 2, complete sequence4e-0661.9BLASTN svgBLASTP svg
NC_010682:30336463033646306386630221Ralstonia pickettii 12J chromosome 1, complete sequence3e-1385.7BLASTN svgBLASTP svg
NC_010682:17637691763769179159927831Ralstonia pickettii 12J chromosome 1, complete sequence3e-1385.7BLASTN svgBLASTP svg
NC_010682:16526361652636167969627061Ralstonia pickettii 12J chromosome 1, complete sequence7e-0867.9BLASTN svgBLASTP svg
NC_019673:27333272733327275459921273Saccharothrix espanaensis DSM 44229 complete genome2e-1179.8BLASTN svgBLASTP svg
NC_006624:405966*40596642459918634Thermococcus kodakarensis KOD1, complete genome4e-0661.9BLASTN svgBLASTP svg