Pre_GI: BLASTP Hits

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Query: NC_007952:2812996:2834950 Burkholderia xenovorans LB400 chromosome 2, complete sequence

Start: 2834950, End: 2836383, Length: 1434

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015065:162317:1967831967831983481566Acidobacterium sp. MP5ACTX9 plasmid pACIX902, complete sequenceTetratricopeptide TPR_1 repeat-containing protein1e-0758.2
NC_013851:2211120:2230538223053822329342397Allochromatium vinosum DSM 180 chromosome, complete genomeMethyltransferase type 115e-1169.7
NC_012225:2834642:2847047284704728484081362Brachyspira hyodysenteriae WA1, complete genomeTPR domain-containing protein3e-0653.9
NC_014150:2617072:2628740262874026297981059Brachyspira murdochii DSM 12563 chromosome, complete genomeTPR repeat-containing protein2e-0757.4
NC_008060:3155133:3155952315595231579011950Burkholderia cenocepacia AU 1054 chromosome 1, complete sequenceTPR repeat2e-0654.7
NC_010625:670482:6935666935666949991434Burkholderia phymatum STM815 plasmid pBPHY01, complete sequenceTetratricopeptide TPR_2 repeat protein0863
NC_007651:3656433:3656433365643336587782346Burkholderia thailandensis E264 chromosome I, complete sequenceTPR domain protein3e-0653.5
NC_011729:1496848:1496848149684815006783831Cyanothece sp. PCC 7424 chromosome, complete genomehypothetical protein2e-0860.8
NC_016616:1861852:1875187187518718768571671Dechlorosoma suillum PS chromosome, complete genomeTfp pilus assembly protein PilF3e-0653.5
NC_015388:2143329:2169087216908721701631077Desulfobacca acetoxidans DSM 11109 chromosome, complete genomeTetratricopeptide TPR_2 repeat-containing protein1e-0552
NC_014216:2054860:2080319208031920826822364Desulfurivibrio alkaliphilus AHT2 chromosome, complete genomeTPR repeat-containing protein8e-0858.9
NC_002939:2697767:2715279271527927169791701Geobacter sulfurreducens PCA, complete genomeTPR domain protein9e-0652
NC_002939:2697767:2717042271704227196362595Geobacter sulfurreducens PCA, complete genomeTPR domain/radical SAM/B12 binding domain protein7e-0652.4
NC_008576:677128:6837586837586852751518Magnetococcus sp. MC-1, complete genomeTetratricopeptide TPR_2 repeat protein4e-0653.1
NC_019977:1245894:1262204126220412649452742Methanomethylovorans hollandica DSM 15978, complete genomeputative endonuclease related to Holliday junction resolvase3e-0860.1
NC_015416:2113949:2133355213335521348121458Methanosaeta concilii GP-6 chromosome, complete genomeTPR-repeat-containing protein2e-0757.8
NC_015416:223968:241305241305242090786Methanosaeta concilii GP-6 chromosome, complete genomeTPR-repeat-containing protein9e-1065.5
NC_014408:1455851:1466636146663614677961161Methanothermobacter marburgensis str. Marburg chromosome, completetetratricopeptide repeat domain-containing protein4e-0653.1
NC_014408:1018448:1026328102632810275481221Methanothermobacter marburgensis str. Marburg chromosome, completetetratricopeptide repeat domain-containing protein2e-0757.4
NC_000916:31459:4322743227444381212Methanothermobacter thermautotrophicus str. Delta H, completeO-linked GlcNAc transferase4e-0653.1
NC_000916:31459:5142651426525651140Methanothermobacter thermautotrophicus str. Delta H, completeO-linked GlcNAc transferase2e-0757.8
NC_011894:2549076:2561841256184125649093069Methylobacterium nodulans ORS 2060, complete genomepeptidase C14 caspase catalytic subunit p205e-0652.8
NC_011894:2503639:2517451251745125199072457Methylobacterium nodulans ORS 2060, complete genomepeptidase C14 caspase catalytic subunit p206e-0652.8
NC_010511:637214:6417186417186448883171Methylobacterium sp. 4-46 chromosome, complete genomepeptidase C14 caspase catalytic subunit p202e-0757.8
NC_002977:1600350:1612101161210116137531653Methylococcus capsulatus str. Bath, complete genomeTPR domain protein8e-0652.4
NC_014733:1073540:1094406109440610961061701Methylovorus sp. MP688 chromosome, complete genometetratricopeptide tpr_2 repeat protein3e-1790.5
NC_005071:288922:3177203177203200442325Prochlorococcus marinus str. MIT 9313, complete genomeSAM (and some other nucleotide) binding motif:TPR repeat4e-1066.6
NC_005071:1903581:1913984191398419164732490Prochlorococcus marinus str. MIT 9313, complete genomeTPR repeat:HAT (Half-A-TPR) repeat1e-1068.6
NC_005071:1903581:1909682190968219113311650Prochlorococcus marinus str. MIT 9313, complete genomeTPR repeat4e-0756.6
NC_005071:1903581:1911797191179719138722076Prochlorococcus marinus str. MIT 9313, complete genomeTPR repeat1e-0861.2
NC_007110:1:2381323813262602448Rickettsia felis URRWXCal2 plasmid pRF, complete sequenceATP-dependent protease La, bacterial type2e-0757.4
NC_008312:7099417:7112497711249771138551359Trichodesmium erythraeum IMS101, complete genomeTPR repeat1e-0758.2
NC_008312:2511500:2521887252188725236711785Trichodesmium erythraeum IMS101, complete genomeTPR repeat7e-0755.8
NC_008312:2264832:2281661228166122831211461Trichodesmium erythraeum IMS101, complete genomeTPR repeat1e-0758.5
NC_008312:2264832:2264832226483222700455214Trichodesmium erythraeum IMS101, complete genomeglycosyl transferase, family 21e-1171.6