Pre_GI: BLASTN Hits

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Query: NC_007951:570500 Burkholderia xenovorans LB400 chromosome 1, complete sequence

Start: 570500, End: 604717, Length: 34218

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_009074:3163362*3163362320181038449Burkholderia pseudomallei 668 chromosome I, complete sequence0823BLASTN svgBLASTP svg
NC_008060:306170*30617034178635617Burkholderia cenocepacia AU 1054 chromosome 1, complete sequence0652BLASTN svgBLASTP svg
NC_008542:855347*85534788974734401Burkholderia cenocepacia HI2424 chromosome 1, complete sequence0652BLASTN svgBLASTP svg
NC_010508:809974*80997484542135448Burkholderia cenocepacia MC0-3 chromosome 1, complete sequence0676BLASTN svgBLASTP svg
NC_007510:759905*75990579524835344Burkholderia sp. 383 chromosome 1, complete sequence0712BLASTN svgBLASTP svg
NC_006348:2372945*2372945241139038446Burkholderia mallei ATCC 23344 chromosome 1, complete sequence0799BLASTN svgBLASTP svg
NC_008836:1072721*1072721111116638446Burkholderia mallei NCTC 10229 chromosome II, complete sequence0799BLASTN svgBLASTP svg
NC_009076:3179662*3179662321810738446Burkholderia pseudomallei 1106a chromosome I, complete sequence0799BLASTN svgBLASTP svg
NC_009080:2123987*2123987216243238446Burkholderia mallei NCTC 10247 chromosome II, complete sequence0799BLASTN svgBLASTP svg
NC_007434:3588081*3588081362652838448Burkholderia pseudomallei 1710b chromosome I, complete sequence0815BLASTN svgBLASTP svg
NC_006350:3329477*3329477336792338447Burkholderia pseudomallei K96243 chromosome 1, complete sequence0823BLASTN svgBLASTP svg
NC_008391:86534086534088883923500Burkholderia cepacia AMMD chromosome 2, complete sequence8e-131476BLASTN svgBLASTP svg
NC_015677:29393012939301296630027000Ramlibacter tataouinensis TTB310 chromosome, complete genome6e-79303BLASTN svgBLASTP svg
NC_008785:51650051650055172735228Burkholderia mallei SAVP1 chromosome II, complete sequence2e-69272BLASTN svgBLASTP svg
NC_011894:2184956*2184956220848223527Methylobacterium nodulans ORS 2060, complete genome5e-30141BLASTN svgBLASTP svg
NC_002516:1031386*1031386109196460579Pseudomonas aeruginosa PAO1, complete genome5e-18101BLASTN svgBLASTP svg
NC_020453:4696000*4696000471843322434Agromonas oligotrophica S58 DNA, complete genome2e-1489.7BLASTN svgBLASTP svg
NC_013961:2861949*2861949288466722719Erwinia amylovora, complete genome4e-1281.8BLASTN svgBLASTP svg
NC_007947:62121362121364060919397Methylobacillus flagellatus KT, complete genome3e-1075.8BLASTN svgBLASTP svg
NC_006905:26300002630000265438924390Salmonella enterica subsp. enterica serovar Choleraesuis str4e-0971.9BLASTN svgBLASTP svg
NC_007953:57292657292660304230117Burkholderia xenovorans LB400 chromosome 3, complete sequence7e-0867.9BLASTN svgBLASTP svg
NC_012779:25861752586175261323427060Edwardsiella ictaluri 93-146, complete genome3e-0765.9BLASTN svgBLASTP svg
NC_020063:11940001194000121676222763Enterobacteriaceae bacterium strain FGI 57, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_015379:60239266023926604728023355Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,1e-0663.9BLASTN svgBLASTP svg
NC_011894:62596496259649628391924271Methylobacterium nodulans ORS 2060, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_010508:18656021865602188921923618Burkholderia cenocepacia MC0-3 chromosome 1, complete sequence4e-0661.9BLASTN svgBLASTP svg
NC_003047:74986*7498610114626161Sinorhizobium meliloti 1021, complete genome4e-0661.9BLASTN svgBLASTP svg