Pre_GI: BLASTP Hits

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Query: NC_007613:4119771:4127597 Shigella boydii Sb227, complete genome

Start: 4127597, End: 4127953, Length: 357

Host Lineage: Shigella boydii; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic that took place in China in the 1950s. Causes dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. Shigella boydii is uncommon except in India, where it was first isolated. Progression to clinical dysentery occurs in most patients infected with this organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010658:4257310:426903042690304269386357Shigella boydii CDC 3083-94, complete genomehypothetical protein3e-63239
NC_012125:4400636:440189744018974402253357Salmonella enterica subsp. enterica serovar Paratyphi C strainhypothetical protein3e-58223
NC_011094:4361238:436249943624994362855357Salmonella enterica subsp. enterica serovar Schwarzengrund strhypothetical protein3e-58223
NC_011149:4390315:439157643915764391932357Salmonella enterica subsp. enterica serovar Agona str. SL483,protein YjbR3e-58223
NC_010102:4396500:439790043979004398256357Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein3e-58223
NC_006905:4405301:440656244065624406918357Salmonella enterica subsp. enterica serovar Choleraesuis strputative cytoplasmic protein3e-58223
NC_010067:3310336:335658133565813356943363Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein3e-58223
NC_011080:4461851:446311244631124463468357Salmonella enterica subsp. enterica serovar Newport str. SL254,protein YjbR6e-58222
NC_011083:4466634:446789544678954468251357Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,protein YjbR6e-58222
NC_003197:4470683:447194444719444472300357Salmonella typhimurium LT2, complete genomeputative cytoplasmic protein2e-57220
NC_006511:4225455:422671642267164227072357Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein2e-57220
NC_011147:4221000:422240342224034222759357Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein2e-57220
NC_011205:4486142:448740344874034487759357Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hypothetical protein2e-57220
NC_011274:4305812:430707343070734307429357Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91hypothetical protein2e-57220
NC_011294:4327904:432916543291654329521357Salmonella enterica subsp. enterica serovar Enteritidis strhypothetical protein2e-57220
NC_016810:4491975:449323644932364493592357Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein2e-57220
NC_016831:4286000:428742342874234287779357Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein2e-57220
NC_016856:4482845:448548644854864485842357Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative cytoplasmic protein2e-57220
NC_016857:4491976:449323744932374493593357Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative cytoplasmic protein2e-57220
NC_016860:4575772:457703345770334577389357Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein2e-57220
NC_016863:4431831:443309244330924433448357Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative cytoplasmic protein2e-57220
NC_017046:4490500:449189744918974492253357Salmonella enterica subsp. enterica serovar Typhimurium str. 798hypothetical protein2e-57220
NC_015761:4098481:409973540997354100097363Salmonella bongori NCTC 12419, complete genomehypothetical protein2e-57220
NC_004631:4300457:430171843017184302074357Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein5e-56216
NC_003198:4315807:431706843170684317424357Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein5e-56216
NC_016832:4288980:429024142902414290597357Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein5e-56216
NC_021066:3769405:379039237903923790748357Raoultella ornithinolytica B6, complete genomehypothetical protein8e-51198
NC_020181:3585898:361742636174263617749324Enterobacter aerogenes EA1509E, complete genomeProtein yjbR1e-47187
NC_014622:724000:727947727947728294348Paenibacillus polymyxa SC2 chromosome, complete genomehypothetical protein9e-1475.5
NC_016113:803268:816402816402816785384Streptomyces cattleya NRRL 8057 plasmid pSCAT, complete sequencehypothetical protein1e-1375.1
NC_015690:7518732:752693575269357527300366Paenibacillus mucilaginosus KNP414 chromosome, complete genomehypothetical protein5e-1269.7
NC_016641:2735054:274303627430362743380345Paenibacillus terrae HPL-003 chromosome, complete genomehypothetical protein6e-1269.3
NC_019842:484933:506798506798507139342Bacillus amyloliquefaciens subsp. plantarum AS43.3 chromosome,hypothetical protein2e-1167.8
NC_009725:496443:511366511366511707342Bacillus amyloliquefaciens FZB42, complete genomehypothetical protein1e-1065.1
NC_009614:2431005:245368424536842454040357Bacteroides vulgatus ATCC 8482 chromosome, complete genomehypothetical protein2e-1064.3
NC_020410:495184:510195510195510536342Bacillus amyloliquefaciens subsp. plantarum UCMB5036 completeUncharacterized protein yyaQ4e-1063.2
NC_011026:2624775:263840726384072638760354Chloroherpeton thalassium ATCC 35110, complete genomeprotein of unknown function DUF4197e-1062.4
NC_016628:763833:790901790901791281381Vibrio furnissii NCTC 11218 chromosome 2, complete sequencehypothetical protein8e-1062.4
NC_014376:1879000:188780018878001888135336Clostridium saccharolyticum WM1 chromosome, complete genomemethylated-DNA-(protein)-cysteine S-methyltransferase8e-1062.4
NC_009348:2738742:275134627513462751702357Aeromonas salmonicida subsp. salmonicida A449, complete genomehypothetical protein1e-0961.6
NC_015571:722815:738266738266738646381Porphyromonas gingivalis TDC60, complete genomehypothetical protein4e-0960.1
NC_016047:2658000:269015326901532690485333Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completeMmcQ protein5e-0959.7
NC_012526:2317862:233088323308832331239357Deinococcus deserti VCD115, complete genomehypothetical protein5e-0959.7
NC_015957:8845274:887267988726798873044366Streptomyces violaceusniger Tu 4113 chromosome, complete genomeMmcQ-like protein7e-0959.3
NC_003910:486776:502587502587502949363Colwellia psychrerythraea 34H, complete genomehypothetical protein1e-0858.5
NC_008228:2068641:207033020703302070836507Pseudoalteromonas atlantica T6c, complete genomeprotein of unknown function DUF4194e-0856.6
NC_015977:189101:208136208136208462327Roseburia hominis A2-183 chromosome, complete genomemethylated-DNA-(protein)-cysteine S-methyltransferase1e-0755.5
NC_014643:2354507:237160123716012372170570Rothia dentocariosa ATCC 17931 chromosome, complete genomehypothetical protein1e-0652
NC_019673:7400817:741735274173527417756405Saccharothrix espanaensis DSM 44229 complete genomehypothetical protein1e-0651.6
NC_011894:4013830:402176340217634022146384Methylobacterium nodulans ORS 2060, complete genomeprotein of unknown function DUF4196e-0649.7