Pre_GI: BLASTP Hits

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Query: NC_007608:97092:102927 Shigella boydii Sb227 plasmid pSB4_227, complete sequence

Start: 102927, End: 103346, Length: 420

Host Lineage: Shigella boydii; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic that took place in China in the 1950s. Causes dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. Shigella boydii is uncommon except in India, where it was first isolated. Progression to clinical dysentery occurs in most patients infected with this organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007607:87000:960909609096509420Shigella dysenteriae Sd197 plasmid pSD1_197, complete sequenceoriT nicking and unwinding protein, fragment5e-67252
NC_007385:157516:1693421693421736254284Shigella sonnei Ss046 plasmid pSS_046, complete sequenceoriT nicking and unwinding protein, fragment3e-55213
NC_004851:191709:198803198803199195393Shigella flexneri 2a str. 301 plasmid pCP301, complete sequenceoriT nicking and unwinding protein8e-54208
NC_017319:192482:198752198752199123372Shigella flexneri 2002017 plasmid pSFxv_1, complete sequenceOriT nicking and unwinding protein9e-54208
NC_009378:106193:1061931061931114335241Yersinia pestis Pestoides F plasmid MT, complete sequenceconjugal transfer nickase/helicase TraI3e-45179
NC_016846:24500:4675446754520125259Klebsiella pneumoniae subsp. pneumoniae HS11286 plasmid pKPHS2,conjugal transfer nickase/helicase TraI2e-43174
NC_008322:1186000:1188914118891411920213108Shewanella sp. MR-7, complete genomeTrwC protein5e-2199.4
NC_009484:2660048:2674385267438526771562772Acidiphilium cryptum JF-5 chromosome, complete genomeexonuclease V subunit alpha1e-1891.7
NC_007794:2304768:2324303232430323259311629Novosphingobium aromaticivorans DSM 12444, complete genomeTrwC protein1e-1581.6
NC_007722:851129:8691878691878720992913Erythrobacter litoralis HTCC2594, complete genomeTrwC protein4e-1579.7
NC_009007:57804:7601176011793463336Rhodobacter sphaeroides 2.4.1 plasmid A, partial sequenceTraI6e-1475.9
NC_007722:168937:1893461893461922582913Erythrobacter litoralis HTCC2594, complete genomeTrwC protein7e-1475.9
NC_016626:1751159:1751159175115917542153057Burkholderia sp. YI23 plasmid byi_1p, complete sequenceputative traC, type IV secretion system4e-1373.2
NC_004460:708416:7159707159707217565787Vibrio vulnificus CMCP6 chromosome II, complete sequenceATP-dependent exoDNAse, alpha subunit1e-1271.6
NC_011916:467106:4887684887684915782811Caulobacter crescentus NA1000 chromosome, complete genomeDNA relaxase/conjugal transfer nickase-helicase TrwC1e-1168.2
NC_015377:34445:5672856728596222895Burkholderia gladioli BSR3 plasmid bgla_2p, complete sequenceTrwC protein2e-1168.2
NC_014819:25765:4311743117462603144Asticcacaulis excentricus CB 48 plasmid pASTEX02, completeconjugative relaxase domain protein2e-1168.2
NC_010660:175200:182964182964183155192Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequence2e-1167.8
NC_012483:729000:752677752677753114438Acidobacterium capsulatum ATCC 51196, complete genomeDNA helicase domain protein7e-1165.9
NC_016631:3917253:3931643393164339343962754Granulicella mallensis MP5ACTX8 chromosome, complete genomeconjugative relaxase domain-containing protein1e-1065.1
NC_015458:327009:3562813562813591782898Pusillimonas sp. T7-7 chromosome, complete genomeTrwC1e-1065.1
NC_011891:1225000:1242880124288012456602781Anaeromyxobacter dehalogenans 2CP-1, complete genomeconjugative relaxase domain protein6e-1062.8
NC_009998:62000:6726667266732265961Shewanella baltica OS195 plasmid pS19501, complete sequenceconjugative transfer relaxase protein TraI9e-1062.4
NC_012483:3731542:3754841375484137575942754Acidobacterium capsulatum ATCC 51196, complete genomeconjugative relaxase domain protein1e-0961.6
NC_012483:3672768:3676616367661636793962781Acidobacterium capsulatum ATCC 51196, complete genomeconjugative relaxase domain protein4e-0960.1
NC_010606:25090:2872928729308792151Acinetobacter baumannii ACICU plasmid pACICU2, complete sequenceTrwC protein4e-0960.1
NC_013422:991500:1012572101257210154032832Halothiobacillus neapolitanus c2, complete genomeconjugative relaxase domain protein4e-0960.1