Pre_GI: BLASTP Hits

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Query: NC_007384:4095016:4116983 Shigella sonnei Ss046, complete genome

Start: 4116983, End: 4117285, Length: 303

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic in China in the 1950s. A leading cause of dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. This extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010498:4166903:418998341899834190714732Escherichia coli SMS-3-5, complete genomelong polar fimbrial operon protein LpfB7e-50195
NC_011750:4490573:451365445136544514385732Escherichia coli IAI39 chromosome, complete genomeputative fimbrial chaperone protein7e-50195
NC_011751:4373961:439704943970494397780732Escherichia coli UMN026 chromosome, complete genomeputative fimbrial chaperone protein7e-50195
NC_002695:4678945:470349547034954703878384Escherichia coli O157:H7 str. Sakai, complete genomeputative fimbrial chaperone3e-22103
NC_002655:4747926:477247647724764772859384Escherichia coli O157:H7 EDL933, complete genomeputative fimbrial chaperone3e-22103
NC_013008:4738083:476263347626334763016384Escherichia coli O157:H7 str. TW14359 chromosome, complete genomefimbrial chaperone3e-22103
NC_013941:4567820:459101445910144591397384Escherichia coli O55:H7 str. CB9615 chromosome, complete genomefimbrial chaperone3e-22103
NC_011353:4782040:480659048065904806967378Escherichia coli O157:H7 str. EC4115 chromosome, complete genome3e-22103
NC_020064:3790472:380667138066713807345675Serratia marcescens FGI94, complete genomeP pilus assembly protein, chaperone PapD1e-1065.1
NC_009778:2227627:227784422778442278518675Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein1e-1065.1
NC_012731:560199:589314589314589994681Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomeputative fimbrial chaperone protein precursor3e-1063.9
NC_009648:293052:312191312191312889699Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeputative fimbrial chaparone3e-1063.5
NC_013850:2685835:270198727019872702664678Klebsiella variicola At-22 chromosome, complete genomePili assembly chaperone, N-terminal protein5e-0960.1
NC_011283:2684046:269719126971912697868678Klebsiella pneumoniae 342 chromosome, complete genomechaperone protein LpfB4e-0960.1
NC_012962:1068102:111749111174911118159669Photorhabdus asymbiotica, complete genomeuncharacterized fimbrial chaperone yrai precursor5e-0959.7
NC_013716:1918664:193605719360571936734678Citrobacter rodentium ICC168, complete genomeputative fimbrial chaperone protein9e-0958.9
NC_009778:1902995:191304419130441913721678Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein1e-0858.9
NC_008258:3224721:324261832426183243313696Shigella flexneri 5 str. 8401, complete genomeputative chaperone4e-0857
NC_008260:125500:132741132741133475735Alcanivorax borkumensis SK2, complete genometype 1 pili chaperone protein FimC4e-0857
NC_013716:357928:402017402017402736720Citrobacter rodentium ICC168, complete genomeputative fimbrial chaperone protein1e-0755.1
NC_020829:1307736:133254713325471333302756Pseudomonas denitrificans ATCC 13867, complete genomechaperone CupA23e-0753.9
NC_011149:3863913:387490038749003875643744Salmonella enterica subsp. enterica serovar Agona str. SL483,pilin chaperone ecpD14e-0753.5
NC_011601:3951324:396324139632413963894654Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomefimbrial chaperone7e-0752.8
NC_014561:76931:938539385394590738Pantoea vagans C9-1 plasmid pPag1, complete sequenceChaperone protein fimB/fhaD precursor7e-0752.8
NC_009778:4014026:402481540248154025576762Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein9e-0752.4
NC_006351:101500:110792110792111529738Burkholderia pseudomallei K96243 chromosome 2, complete sequencefimbria-related chaperone9e-0752.4
NC_013282:1256769:127043712704371271195759Cronobacter turicensis, complete genomehypothetical protein9e-0752.4
NC_015224:1914833:193453119345311935265735Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,pili assembly chaperone9e-0752.4
NC_007435:1914375:194926119492611949983723Burkholderia pseudomallei 1710b chromosome II, complete sequencechaperone protein EcpD precursor9e-0752.4
NC_014618:1103239:111353711135371114214678Enterobacter cloacae SCF1 chromosome, complete genomePili assembly chaperone, N-terminal protein8e-0752.4
NC_013282:4312791:431891643189164319599684Cronobacter turicensis, complete genomehypothetical protein1e-0652
NC_020064:79422:819628196282783822Serratia marcescens FGI94, complete genomeP pilus assembly protein, chaperone PapD2e-0651.6
NC_011751:12000:217012170122384684Escherichia coli UMN026 chromosome, complete genomeputative membrane-associated pilin chaperone2e-0651.6
NC_010468:3835259:384356538435653844290726Escherichia coli ATCC 8739, complete genomepili assembly chaperone1e-0651.6
NC_008253:296500:312475312475313170696Escherichia coli 536, complete genomeF1C periplasmic chaperone2e-0650.8
NC_004431:1166568:118940611894061190101696Escherichia coli CFT073, complete genomeF1C periplasmic chaperone2e-0650.8
NC_020211:103371:119423119423120229807Serratia marcescens WW4, complete genomepili assembly chaperone3e-0650.8
NC_015061:4203767:422865542286554229344690Rahnella sp. Y9602 chromosome, complete genomePili assembly chaperone, N-terminal protein3e-0650.4
NC_017047:4298207:432257043225704323259690Rahnella aquatilis HX2 chromosome, complete genomePili assembly chaperone, N-terminal protein3e-0650.4
NC_009832:4564752:459792045979204598675756Serratia proteamaculans 568, complete genomepili assembly chaperone3e-0650.4
NC_014562:1402863:141149314114931412239747Pantoea vagans C9-1 chromosome, complete genomeChaperone protein fimC precursor4e-0650.1
NC_015424:525039:534384534384535115732Aeromonas veronii B565 chromosome, complete genomeFimbrial chaperone protein5e-0650.1
NC_008570:546736:556433556433557164732Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomefimbrial chaperone protein5e-0649.7
NC_010498:153755:165865165865166605741Escherichia coli SMS-3-5, complete genomeperiplasmic pilus chaperone family protein5e-0649.7
NC_015566:5197624:519884251988425199597756Serratia sp. AS12 chromosome, complete genomePili assembly chaperone7e-0649.3
NC_013282:3781149:379115837911583791913756Cronobacter turicensis, complete genomeUncharacterized fimbrial chaperone yfcS8e-0649.3
NC_020211:689451:694644694644695369726Serratia marcescens WW4, complete genomepili assembly chaperone9e-0648.9
NC_011750:12047:255542555426237684Escherichia coli IAI39 chromosome, complete genomeputative membrane-associated pilin chaperone1e-0548.9