Pre_GI: BLASTP Hits

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Query: NC_007384:4095016:4100934 Shigella sonnei Ss046, complete genome

Start: 4100934, End: 4101530, Length: 597

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic in China in the 1950s. A leading cause of dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. This extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017328:3935185:395785939578593958680822Shigella flexneri 2002017 chromosome, complete genomeTransposon Tn7 transposition protein tnsA2e-105381
NC_014844:2721746:272906127290612729885825Desulfovibrio aespoeensis Aspo-2 chromosome, complete genomeTnsA endonuclease3e-38157
NC_015572:4916430:493891649389164939740825Methylomonas methanica MC09 chromosome, complete genomeTnsA endonuclease6e-33140
NC_006512:2789098:281413028141302814957828Idiomarina loihiensis L2TR, complete genomeTransposon Tn7 transposition protein tnsA2e-31135
NC_020409:1589044:159207115920711592796726Desulfovibrio piezophilus str. nov C1TLV30 chromosome, completeTransposon Tn7 transposition protein tnsA4e-31134
NC_015851:89006:107839107839108693855Acidithiobacillus caldus SM-1 megaplasmid, complete sequencetransposon Tn7 transposition protein TnsA1e-26119
NC_009052:5089963:510264651026465103467822Shewanella baltica OS155, complete genometransposon Tn7 transposition protein TnsA2e-26118
NC_015497:4564339:457012945701294570923795Glaciecola agarilytica 4H-3-7+YE-5 chromosome, complete genomeTnsA endonuclease7e-22103
NC_015740:4508375:452053845205384521173636Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completeTnsA endonuclease6e-1477.4
NC_010995:4525119:455082845508284551685858Cellvibrio japonicus Ueda107, complete genomeTn7-Cj, transposase protein TnsA1e-1375.9
NC_014394:1325616:133114213311421331990849Gallionella capsiferriformans ES-2 chromosome, complete genomeTnsA endonuclease2e-1375.5
NC_010634:4463727:448754544875454488366822Yersinia pseudotuberculosis PB1/+, complete genomeTnsA endonuclease8e-1270.1
NC_015958:2174731:218659121865912187451861Thermoanaerobacter wiegelii Rt8.B1 chromosome, complete genomeTnsA endonuclease7e-1167
NC_009838:81913:109164109164110006843Escherichia coli APEC O1 plasmid pAPEC-O1-R, complete sequenceTnsA7e-0960.5
NC_011748:3983432:400020340002034001045843Escherichia coli 55989, complete genomeTn7-like transposase TnsA7e-0960.5
CU928145:3983432:400020340002034001045843Escherichia coli 55989 chromosome, complete genomeTn7-like transposase TnsA7e-0960.5
NC_014657:2127500:213820721382072139064858Caldicellulosiruptor owensensis OL chromosome, complete genometnsa endonuclease1e-0756.6
NC_013921:1915377:192623919262391927099861Thermoanaerobacter italicus Ab9 chromosome, complete genomeTnsA endonuclease1e-0756.6
NC_007492:6372900:641706364170636417950888Pseudomonas fluorescens PfO-1, complete genomehypothetical protein2e-0755.5
NC_015942:763500:774012774012774749738Acidithiobacillus ferrivorans SS3 chromosome, complete genomeTnsA endonuclease6e-0753.9
NC_011206:200000:208744208744209589846Acidithiobacillus ferrooxidans ATCC 53993, complete genomeTnsA endonuclease1e-0652.8