Pre_GI: BLASTP Hits

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Query: NC_007384:4095016:4096419 Shigella sonnei Ss046, complete genome

Start: 4096419, End: 4096838, Length: 420

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic in China in the 1950s. A leading cause of dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. This extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004337:3590323:392282139228213923234414Shigella flexneri 2a str. 301, complete genomeATP synthase subunit epsilon8e-66248
NC_016632:1:612161216534414Serratia symbiotica str. 'Cinara cedri' chromosome, completeATP synthase e chain2e-47187
NC_004344:1:824282428658417Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis,hypothetical protein1e-32138
NC_015222:386000:397601397601398023423Nitrosomonas sp. AL212 chromosome, complete genomeATP synthase F1, epsilon subunit1e-29128
NC_015740:4508375:452626145262614526683423Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completeF0F1 ATP synthase subunit epsilon1e-28124
NC_007005:6056765:607711360771136077538426Pseudomonas syringae pv. syringae B728a, complete genomeATP synthase subunit epsilon1e-27121
NC_017986:2687588:271260527126052713024420Pseudomonas putida ND6 chromosome, complete genomeF0F1 ATP synthase subunit epsilon1e-27121
NC_009512:5920960:594369159436915944110420Pseudomonas putida F1, complete genomeATP synthase F1, epsilon subunit1e-27121
NC_010322:6037566:606304160630416063460420Pseudomonas putida GB-1 chromosome, complete genomeF0F1 ATP synthase subunit epsilon2e-27120
NC_010501:5735656:575819157581915758610420Pseudomonas putida W619, complete genomeATP synthase F1, epsilon subunit2e-27120
NC_002947:6152500:617474761747476175166420Pseudomonas putida KT2440, complete genomeATP synthase subunit epsilon5e-27119
NC_004757:230541:241984241984242406423Nitrosomonas europaea ATCC 19718, complete genomeATP synthase, Delta/Epsilon chain2e-26117
NC_015572:4916430:494317549431754943597423Methylomonas methanica MC09 chromosome, complete genomeATP synthase subunit epsilon3e-26116
NC_007492:6372900:642242064224206422845426Pseudomonas fluorescens PfO-1, complete genomeH+-transporting two-sector ATPase, delta/epsilon subunit5e-26116
NC_015733:5955467:597767459776745978087414Pseudomonas putida S16 chromosome, complete genomeF0F1 ATP synthase subunit epsilon6e-26115
NC_019815:679592:689809689809690240432Candidatus Kinetoplastibacterium crithidii (ex Angomonas deaneiF-type H+-transporting ATPase subunit epsilon1e-21101
NC_002488:1099975:110079711007971101228432Xylella fastidiosa 9a5c, complete genomeATP synthase subunit epsilon2e-21100
NC_015565:2736500:277016027701602770558399Desulfotomaculum carboxydivorans CO-1-SRB chromosome, completeATP synthase subunit epsilon5e-2096.3
NC_015589:3711821:375611137561113756509399Desulfotomaculum ruminis DSM 2154 chromosome, complete genomeATP synthase F1 subunit epsilon2e-1891.3
NC_011761:684969:687796687796688311516Acidithiobacillus ferrooxidans ATCC 23270 chromosome, completeATP synthase F1 subunit epsilon3e-1890.5
NC_011206:863987:866814866814867329516Acidithiobacillus ferrooxidans ATCC 53993, complete genomeATP synthase F1, epsilon subunit6e-1889.4
NC_011761:2131911:216872721687272169218492Acidithiobacillus ferrooxidans ATCC 23270 chromosome, completeATP synthase F1 subunit epsilon4e-1786.7
NC_011206:2040000:205676920567692057260492Acidithiobacillus ferrooxidans ATCC 53993, complete genomeATP synthase F1, epsilon subunit4e-1786.7
NC_018645:2301705:230721523072152307622408Desulfobacula toluolica Tol2, complete genomeF0F1 ATP synthase subunit epsilon1e-1582
NC_011768:4571869:459247345924734592898426Desulfatibacillum alkenivorans AK-01, complete genomeATP synthase F1, epsilon subunit8e-1579
NC_012108:3965433:397874439787443979151408Desulfobacterium autotrophicum HRM2, complete genomeAtpC27e-1475.9
NC_004722:5194000:521568752156875216088402Bacillus cereus ATCC 14579, complete genomeATP synthase subunit epsilon2e-1374.7
NC_005957:5037499:504192650419265042327402Bacillus thuringiensis serovar konkukian str. 97-27, completeATP synthase subunit epsilon2e-1374.7
NC_012472:5055184:507620250762025076603402Bacillus cereus 03BB102, complete genomeATP synthase F1, epsilon subunit2e-1374.7
NC_006274:5085860:510691251069125107313402Bacillus cereus E33L, complete genomeATP synthase subunit epsilon2e-1374.7
NC_008600:5046000:506615250661525066553402Bacillus thuringiensis str. Al Hakam, complete genomeATP synthase F1, epsilon subunit2e-1374.7
NC_003909:4996783:501600150160015016402402Bacillus cereus ATCC 10987, complete genomeATP synthase subunit epsilon2e-1374.7
NC_011658:5049349:507109350710935071494402Bacillus cereus AH187 chromosome, complete genomeF0F1 ATP synthase subunit epsilon2e-1374.7
NC_011725:5201995:522365552236555224056402Bacillus cereus B4264 chromosome, complete genomeATP synthase F0F1 subunit epsilon2e-1374.7
NC_011969:4993386:501524550152455015646402Bacillus cereus Q1 chromosome, complete genomeF0F1 ATP synthase subunit epsilon2e-1374.7
NC_014171:5107956:512766751276675128068402Bacillus thuringiensis BMB171 chromosome, complete genomeF0F1 ATP synthase subunit epsilon2e-1374.7
NC_016779:5009320:503055250305525030953402Bacillus cereus F837/76 chromosome, complete genomeATP synthase subunit epsilon2e-1374.7
NC_017200:5149528:515508351550835155484402Bacillus thuringiensis serovar finitimus YBT-020 chromosome,F0F1 ATP synthase subunit epsilon2e-1374.7
NC_014829:4346500:438576143857614386162402Bacillus cellulosilyticus DSM 2522 chromosome, complete genomeATP synthase F1, epsilon subunit2e-1374.7
NC_017208:5273500:529089752908975291298402Bacillus thuringiensis serovar chinensis CT-43 chromosome, completeF0F1 ATP synthase subunit epsilon2e-1374.3
NC_007530:5033095:503751050375105037911402Bacillus anthracis str. 'Ames Ancestor', complete genomeATP synthase subunit epsilon2e-1374.3
NC_011772:5158680:517747251774725177873402Bacillus cereus G9842, complete genomeATP synthase F1, epsilon subunit2e-1374.3
NC_003997:5032969:503738450373845037785402Bacillus anthracis str. Ames, complete genomeATP synthase subunit epsilon2e-1374.3
NC_011773:5091609:509719450971945097595402Bacillus cereus AH820 chromosome, complete genomeF0F1 ATP synthase subunit epsilon2e-1374.3
NC_012659:5031827:503741050374105037811402Bacillus anthracis str. A0248, complete genomeF0F1 ATP synthase subunit epsilon2e-1374.3
NC_013939:1902397:190834119083411908757417Deferribacter desulfuricans SSM1, complete genomeF0F1-type ATP synthase subunit epsilon2e-1374.3
NC_021171:4588792:463678746367874637194408Bacillus sp. 1NLA3E, complete genomeF0F1 ATP synthase subunit epsilon7e-1372.8
NC_014335:4969549:499063649906364991037402Bacillus cereus biovar anthracis str. CI chromosome, completeATP synthase subunit E1e-1271.6
NC_008262:2379144:238841923884192388820402Clostridium perfringens SM101, complete genomeATP synthase F1, epsilon subunit3e-1270.9
NC_008261:2708929:272186927218692722270402Clostridium perfringens ATCC 13124, complete genomeATP synthase F1, epsilon subunit3e-1270.5
NC_003366:2494907:250785425078542508255402Clostridium perfringens str. 13, complete genomeATP synthase epsilon subunit3e-1270.5
NC_015696:517941:559729559729560166438Francisella sp. TX077308 chromosome, complete genomeATP synthase subunit delta1e-1168.6
NC_007759:623116:634636634636635043408Syntrophus aciditrophicus SB, complete genomeATP synthase epsilon chain1e-1168.6
NC_008554:3177723:319531631953163195720405Syntrophobacter fumaroxidans MPOB, complete genomeATP synthase F1, epsilon subunit1e-1168.6
NC_010336:996661:103827810382781038715438Francisella philomiragia subsp. philomiragia ATCC 25017, completeATP synthase, F1 sector, subunit epsilon3e-1167.4
NC_010001:4586000:458898245889824589401420Clostridium phytofermentans ISDg, complete genomeATP synthase F1, epsilon subunit7e-1165.9
NC_010677:96470:138037138037138474438Francisella tularensis subsp. mediasiatica FSC147, complete genomeATP synthase, F1 sector, subunit epsilon8e-1165.9
NC_007622:2117188:211932121193212119725405Staphylococcus aureus RF122, complete genomeATP synthase epsilon chain1e-1065.5
NC_002951:2153571:215671521567152157119405Staphylococcus aureus subsp. aureus COL, complete genomeATP synthase F1, epsilon subunit1e-1065.5
NC_003923:2178000:218181921818192182223405Staphylococcus aureus subsp. aureus MW2, complete genomeFoF1-ATP synthase epsilon subunit1e-1065.5
NC_002953:2157781:216092421609242161328405Staphylococcus aureus subsp. aureus MSSA476, complete genomeATP synthase epsilon chain1e-1065.5
NC_007795:2163706:216743921674392167843405Staphylococcus aureus subsp. aureus NCTC 8325, complete genomeATP synthase F1, epsilon subunit1e-1065.5
NC_007793:2217872:222051722205172220921405Staphylococcus aureus subsp. aureus USA300, complete genomeATP synthase F1, epsilon subunit1e-1065.5
NC_002758:2227874:223160722316072232011405Staphylococcus aureus subsp. aureus Mu50, complete genomeFoF1-ATP synthase epsilon subunit1e-1065.5
NC_002952:2256000:225953422595342259938405Staphylococcus aureus subsp. aureus MRSA252, complete genomeATP synthase epsilon chain1e-1065.5
NC_009782:2230000:223324522332452233649405Staphylococcus aureus subsp. aureus Mu3, complete genomeFoF1-ATP synthase epsilon subunit1e-1065.5
NC_010079:2217767:222091122209112221315405Staphylococcus aureus subsp. aureus USA300_TCH1516, completeF-ATPase superfamily proton( H+)- or sodium (Na+)-translocating F-type ATPase epsilon subunit1e-1065.5
NC_014654:454633:463719463719464150432Halanaerobium sp. 'sapolanicus' chromosome, complete genomeATP synthase F1, epsilon subunit1e-1065.5
NC_002745:2152000:215517521551752155579405Staphylococcus aureus subsp. aureus N315, complete genomeFoF1-ATP synthase epsilon subunit1e-1065.5
NC_009487:2257889:226162222616222262026405Staphylococcus aureus subsp. aureus JH9 chromosome, completeF0F1 ATP synthase subunit epsilon1e-1065.5
NC_019970:813917:827152827152827565414Thermoanaerobacterium thermosaccharolyticum M0795, complete genomeATP synthase, F1 epsilon subunit9e-1165.5
NC_008601:1733940:175970717597071760144438Francisella tularensis subsp. novicida U112, complete genomeATP synthase, F1 sector, subunit epsilon9e-1165.5
NC_006570:24636:661886618866625438Francisella tularensis subsp. tularensis Schu 4, complete genomeATP synthase epsilon chain9e-1165.5
NC_017351:2199644:220340822034082203812405Staphylococcus aureus subsp. aureus 11819-97 chromosome, completeATP synthase F1 subunit epsilon1e-1065.5
NC_017342:1147517:116132911613291161733405Staphylococcus aureus subsp. aureus TCH60 chromosome, completeATP synthase F1 sector epsilon subunit1e-1065.5
NC_017341:2247696:225084022508402251244405Staphylococcus aureus subsp. aureus str. JKD6008 chromosome,ATP synthase epsilon chain, AtpE1e-1065.5
NC_017337:2186449:219161021916102192014405Staphylococcus aureus subsp. aureus ED133 chromosome, completeATP synthase subunit epsilon1e-1065.5
NC_016928:2121919:212493621249362125340405Staphylococcus aureus subsp. aureus M013 chromosome, completeATP synthase subunit epsilon1e-1065.5
NC_016912:2035589:203873320387332039137405Staphylococcus aureus subsp. aureus VC40 chromosome, completeF0F1 ATP synthase subunit epsilon1e-1065.5
NC_009641:2221891:222509822250982225502405Staphylococcus aureus subsp. aureus str. Newman chromosome,F0F1 ATP synthase subunit epsilon1e-1065.5
NC_009632:2257764:226149722614972261901405Staphylococcus aureus subsp. aureus JH1 chromosome, completeF0F1 ATP synthase subunit epsilon1e-1065.5
NC_009749:1699152:172410517241051724542438Francisella tularensis subsp. holarctica FTA, complete genomeATP synthase F1, epsilon subunit2e-1064.7
NC_008369:1702885:172783817278381728275438Francisella tularensis subsp. holarctica OSU18, complete genomeH(+)-transporting two-sector ATPase2e-1064.7
NC_007880:1703346:172820817282081728645438Francisella tularensis subsp. holarctica, complete genomeATP synthase epsilon chain2e-1064.7
NC_009495:183767:191680191680192081402Clostridium botulinum A str. ATCC 3502 chromosome, complete genomeATP synthase F0F1 subunit epsilon2e-1064.3
NC_004193:3078730:308488430848843085279396Oceanobacillus iheyensis HTE831, complete genomeH(+)-transporting ATP synthase epsilon chain3e-1063.9
NC_007516:1974500:198886519888651989275411Synechococcus sp. CC9605, complete genomeATP synthase subunit epsilon5e-1063.2
NC_013235:402819:415081415081415473393Nakamurella multipartita DSM 44233, complete genomeATP synthase F1, epsilon subunit6e-1062.8
NC_013203:1447340:146463114646311465053423Atopobium parvulum DSM 20469, complete genomeATP synthase F1, epsilon subunit1e-0962
NC_009922:2721343:276212827621282762532405Alkaliphilus oremlandii OhILAs, complete genomeATP synthase F1, epsilon subunit2e-0961.2
NC_011296:229494:244043244043244465423Thermodesulfovibrio yellowstonii DSM 11347, complete genomeF0F1 ATP synthase subunit epsilon2e-0960.8
NC_019757:5085648:510467251046725105085414Cylindrospermum stagnale PCC 7417, complete genomeATP synthase, F1 epsilon subunit3e-0960.5
NC_007513:513806:516663516663517073411Synechococcus sp. CC9902, complete genomeATP synthase subunit epsilon1e-0858.9
NC_008599:1489868:150038015003801500769390Campylobacter fetus subsp. fetus 82-40, complete genomeATP synthase F1, epsilon subunit2e-0857.4
NC_007205:221539:227367227367227759393Candidatus Pelagibacter ubique HTCC1062, complete genomeATP synthase epsilon chain (ATP synthase F1 sector epsilon subunit)3e-0857
NC_018664:201487:210790210790211188399Clostridium acidurici 9a chromosome, complete genomeF-ATPase, F1 complex, subunit epsilon AtpC9e-0855.5
NC_014166:2319447:233776723377672338144378Arcobacter nitrofigilis DSM 7299 chromosome, complete genomeATP synthase F1 subunit epsilon4e-0753.5
NC_010296:54000:729127291273328417Microcystis aeruginosa NIES-843, complete genomeF0F1 ATP synthase subunit epsilon4e-0753.5
NC_017192:2114433:212128121212812121658378Arcobacter sp. L, complete genomeF0F1 ATP synthase epsilon subunit7e-0752.8
NC_021182:4427468:444350244435024443906405Clostridium pasteurianum BC1, complete genomeATP synthase, F1 epsilon subunit1e-0652
NC_015318:981989:982564982564982962399Hippea maritima DSM 10411 chromosome, complete genomeATP synthase subunit epsilon1e-0652
NC_013093:7174636:718669271866927187057366Actinosynnema mirum DSM 43827, complete genomeATP synthase F1, epsilon subunit1e-0651.6
NC_009850:1601982:160566216056621606039378Arcobacter butzleri RM4018, complete genomeATP synthase F1 sector, epsilon subunit3e-0650.8
NC_017187:1511567:152116915211691521546378Arcobacter butzleri ED-1, complete genomeF0F1 ATP synthase epsilon subunit3e-0650.8
NC_013714:2203854:221653422165342216815282Bifidobacterium dentium Bd1, complete genomeATP synthase epsilon chain3e-0650.4
NC_014932:1387818:140065214006521401068417Bartonella clarridgeiae 73, complete genomeATP synthase epsilon chain (ATP synthase F1 sector epsilon subunit)3e-0650.4
NC_017219:333279:361092361092361388297Bifidobacterium longum subsp. infantis ATCC 15697, complete genomeATP synthase subunit epsilon4e-0650.1
NC_011593:333488:361304361304361597294Bifidobacterium longum subsp. infantis ATCC 15697 chromosome,F0F1 ATP synthase subunit epsilon4e-0650.1
NC_014363:114239:154829154829155254426Olsenella uli DSM 7084 chromosome, complete genomeATP synthase F1 subcomplex epsilon subunit5e-0649.7