Pre_GI: BLASTP Hits

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Query: NC_007384:2587876:2602410 Shigella sonnei Ss046, complete genome

Start: 2602410, End: 2603354, Length: 945

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic in China in the 1950s. A leading cause of dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. This extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008258:2473000:248604524860452486989945Shigella flexneri 5 str. 8401, complete genomeputative receptor protein5e-162570
NC_009801:2639787:265275126527512653695945Escherichia coli E24377A, complete genometransporter, auxin efflux carrier family5e-162570
CU928145:2708500:272162327216232722567945Escherichia coli 55989 chromosome, complete genomeputative transporter5e-162570
NC_008563:2610499:262304726230472623991945Escherichia coli APEC O1, complete genomeputative transporter protein5e-162570
CP002797:2472908:249084624908462491790945Escherichia coli NA114, complete genomehypothetical protein5e-162570
NC_007606:2353098:236647223664722367416945Shigella dysenteriae Sd197, complete genomeputative receptor protein5e-162570
NC_011748:2708500:272162327216232722567945Escherichia coli 55989, complete genomeputative transporter YfdV5e-162570
NC_007613:2376974:239117423911742392118945Shigella boydii Sb227, complete genomeputative receptor protein5e-162570
NC_004431:2747237:277163027716302772574945Escherichia coli CFT073, complete genomeHypothetical protein yfdV5e-162570
NC_010498:2555706:258006225800622581006945Escherichia coli SMS-3-5, complete genomeauxin efflux carrier family protein5e-162570
NC_010658:2529033:254393925439392544883945Shigella boydii CDC 3083-94, complete genometransporter, auxin efflux carrier family protein5e-162570
NC_010473:2548946:257902925790292579973945Escherichia coli str. K-12 substr. DH10B, complete genomepredicted transporter5e-162570
NC_008253:2499735:251267725126772513621945Escherichia coli 536, complete genomehypothetical protein YfdV5e-162570
NC_011750:2585015:261104426110442611988945Escherichia coli IAI39 chromosome, complete genomeputative transporter YfdV5e-162570
NC_004337:2478461:249230524923052493249945Shigella flexneri 2a str. 301, complete genomeputative receptor protein5e-162570
CP002185:2659628:267370126737012674645945Escherichia coli W, complete genomepredicted transporter5e-162570
CU928160:2513000:252611225261122527056945Escherichia coli IAI1 chromosome, complete genomeputative transporter5e-162570
AP010958:2911741:294023929402392941183945Escherichia coli O103:H2 str. 12009 DNA, complete genomepredicted transporter5e-162570
NC_012967:2409500:242346924234692424413945Escherichia coli B str. REL606 chromosome, complete genomeputative transporter YfdV5e-162570
NC_012947:1363724:137183013718301372774945Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completetransporter YfdV5e-162570
NC_009800:2505872:252064725206472521591945Escherichia coli HS, complete genometransporter, auxin efflux carrier family5e-162570
NC_017328:2516000:252994725299472530891945Shigella flexneri 2002017 chromosome, complete genomeputative transporter yfdV5e-162570
NC_016902:1419413:143121214312121432156945Escherichia coli KO11FL chromosome, complete genomeauxin efflux carrier family protein5e-162570
NC_016822:2678691:269322526932252694169945Shigella sonnei 53G, complete genomeputative transporter YfdV5e-162570
NC_013941:2928000:295844529584452959389945Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein5e-162570
NC_013353:2911741:294023929402392941183945Escherichia coli O103:H2 str. 12009, complete genometransporter5e-162570
NC_011745:2751437:276398527639852764929945Escherichia coli ED1a chromosome, complete genomeputative transporter YfdV5e-162570
NC_011751:2768864:278182827818282782772945Escherichia coli UMN026 chromosome, complete genomeputative transporter YfdV5e-162570
CP002516:1419413:143121214312121432156945Escherichia coli KO11, complete genomeAuxin Efflux Carrier5e-162570
NC_010468:1412791:142089714208971421841945Escherichia coli ATCC 8739, complete genomeAuxin Efflux Carrier5e-162570
NC_011353:3276734:332149133214913322435945Escherichia coli O157:H7 str. EC4115 chromosome, complete genometransporter YfdV5e-162570
NC_011601:2614691:264565526456552646599945Escherichia coli O127:H6 str. E2348/69 chromosome, complete genometransporter YfdV5e-162570
NC_011741:2513000:252611225261122527056945Escherichia coli IAI1 chromosome, complete genomeputative transporter YfdV5e-162570
NC_011742:2533500:254614225461422547086945Escherichia coli S88 chromosome, complete genometransporter YfdV5e-162570
NC_004741:2456297:247066524706652471387723Shigella flexneri 2a str. 2457T, complete genome2e-123442
NC_012815:1682872:1699843169984317009461104Bifidobacterium animalis subsp. lactis DSM 10140, complete genomepermease3e-71268
NC_012814:1682500:1700126170012617012291104Bifidobacterium animalis subsp. lactis Bl-04, complete genomepermease3e-71268
NC_011835:813345:8308958308958319981104Bifidobacterium animalis subsp. lactis AD011 chromosome, completereceptor3e-71268
NC_017216:1682219:1699771169977117008741104Bifidobacterium animalis subsp. lactis BLC1, complete genomePutative Auxin Efflux Carrier (AEC) Family3e-71268
NC_017217:1688441:1705412170541217065151104Bifidobacterium animalis subsp. lactis V9 chromosome, completepermease3e-71268
NC_016027:346768:355479355479356417939Gluconacetobacter xylinus NBRC 3288, complete genomepermease1e-24114
NC_006677:435652:439845439845440825981Gluconobacter oxydans 621H, complete genomePutative transport protein1e-23110
NC_014622:3525017:354454535445453545504960Paenibacillus polymyxa SC2 chromosome, complete genomeauxin efflux carrier9e-1684.3
NC_014483:3235968:325420232542023255161960Paenibacillus polymyxa E681 chromosome, complete genomehypothetical protein1e-1584
NC_015460:418826:438472438472439428957Gallibacterium anatis UMN179 chromosome, complete genomeputative transporter YfdV7e-0858.2
NC_012881:3727150:372827337282733729238966Desulfovibrio salexigens DSM 2638, complete genomeAuxin Efflux Carrier5e-0755.5
NC_014328:1263139:128015012801501281073924Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeputative permease6e-0755.1
NC_015977:935798:961728961728962681954Roseburia hominis A2-183 chromosome, complete genomehypothetical protein1e-0653.9
NC_018868:3036205:306405430640543065019966Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genomehypothetical protein3e-0653.1
NC_015137:1207769:122491712249171225861945Burkholderia sp. CCGE1001 chromosome 2, complete sequenceauxin efflux carrier5e-0652.4