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Query: NC_006576:12230 Synechococcus elongatus PCC 6301, complete genome

Start: 12230, End: 39594, Length: 27365

Host Lineage: Synechococcus elongatus; Synechococcus; Synechococcaceae; Chroococcales; Cyanobacteria; Bacteria

General Information: Freshwater organism. These unicellular cyanobacteria are also known as blue green algae and along with Prochlorococcus are responsible for a large part of the carbon fixation that occurs in marine environments. Synechococcus have a broader distribution in the ocean and are less abundant in oligotrophic (low nutrient) regions. These organism utilize photosystem I and II to capture light energy. They are highly adapted to marine environments and some strains have evolved unique motility systems in order to propel themselves towards areas that contain nitrogenous compounds. An obligate photoautotroph, it has been studied extensively by an international research community with respect to acquisition of organic carbon, transport and regulation of nitrogen compounds, adaptation to nutrient stresses, and reponse to light intensity.

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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_007604:1586243*1586243162944943207Synechococcus elongatus PCC 7942, complete genome035940BLASTN svgBLASTP svg
NC_006576:26834672683467270949926033Synechococcus elongatus PCC 6301, complete genome02014BLASTN svgBLASTP svg
NC_011884:16658881665888168716421277Cyanothece sp. PCC 7425, complete genome4e-21111BLASTN svgBLASTP svg
NC_011296:801612*80161282480423193Thermodesulfovibrio yellowstonii DSM 11347, complete genome9e-1383.8BLASTN svgBLASTP svg
NC_013440:87175008717500874403126532Haliangium ochraceum DSM 14365, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_014414:24918112491811251127919469Parvularcula bermudensis HTCC2503 chromosome, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_002939:2337402*2337402239671759316Geobacter sulfurreducens PCA, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_010814:24828482482848252671743870Geobacter lovleyi SZ, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_011146:896000*89600091840322404Geobacter bemidjiensis Bem, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_014973:4174668*4174668421021135544Geobacter sp. M18 chromosome, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_012793:2122036*2122036214675524720Geobacillus sp. WCH70, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_014483:19532119532121643021110Paenibacillus polymyxa E681 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_013440:5509790*5509790553637126582Haliangium ochraceum DSM 14365, complete genome3e-0661.9BLASTN svgBLASTP svg