Pre_GI: BLASTN Hits

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Query: NC_006155:4105542 Yersinia pseudotuberculosis IP 32953, complete genome

Start: 4105542, End: 4127368, Length: 21827

Host Lineage: Yersinia pseudotuberculosis; Yersinia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is a fully virulent serotype I strain isolated from a human patient. Environmental bacterium that causes gastrointestinal disease. Specific virulence factors are encoded within pathogenicity islands (PAIs) that are required for the invasive phenotype associated with Yersinia infections. One key virulence plasmid contained by the three human-specific pathogens is pCD1/pYv, which encodes a type III secretion system for the delivery of virulence proteins that contribute to internalization into the host cell. This organism was first isolated in 1883 by Malassez and Vignal and is termed pseudotuberculosis since it causes lesions in the lung that are similar to those observed during tuberculosis infection. It is ubiquitous in the environment and is a food and waterborne pathogen that affects animals as well as humans by causing gastroenteritis like Yersinia enterocolitica.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_010634:40457944045794406762021827Yersinia pseudotuberculosis PB1/+, complete genome021670BLASTN svgBLASTP svg
NC_008150:35294303529430355292623497Yersinia pestis Antiqua, complete genome020390BLASTN svgBLASTP svg
NC_004088:39559333955933398002524093Yersinia pestis KIM, complete genome020390BLASTN svgBLASTP svg
NC_010159:11012411101241112572024480Yersinia pestis Angola, complete genome020340BLASTN svgBLASTP svg
NC_003143:64555964555966798722429Yersinia pestis CO92, complete genome013750BLASTN svgBLASTP svg
NC_005810:32383913238391326081922429Yersinia pestis biovar Microtus str. 91001, complete genome013740BLASTN svgBLASTP svg
NC_010465:17907391790739181268021942Yersinia pseudotuberculosis YPIII, complete genome0803BLASTN svgBLASTP svg
NC_006155:29795002979500301649636997Yersinia pseudotuberculosis IP 32953, complete genome0803BLASTN svgBLASTP svg
NC_010634:28946312894631293584741217Yersinia pseudotuberculosis PB1/+, complete genome0795BLASTN svgBLASTP svg
NC_003143:27784942778494279956221069Yersinia pestis CO92, complete genome0763BLASTN svgBLASTP svg
NC_004088:1851500*1851500188954638047Yersinia pestis KIM, complete genome0763BLASTN svgBLASTP svg
NC_005810:25496802549680258809938420Yersinia pestis biovar Microtus str. 91001, complete genome0763BLASTN svgBLASTP svg
NC_008149:23373362337336236141524080Yersinia pestis Nepal516, complete genome0763BLASTN svgBLASTP svg
NC_008150:22071982207198223127724080Yersinia pestis Antiqua, complete genome0763BLASTN svgBLASTP svg
NC_010159:17940001794000181359119592Yersinia pestis Angola, complete genome0755BLASTN svgBLASTP svg
NC_015663:18690001869000191219543196Enterobacter aerogenes KCTC 2190 chromosome, complete genome7e-81309BLASTN svgBLASTP svg
NC_012912:21741832174183220033726155Dickeya zeae Ech1591, complete genome6e-75289BLASTN svgBLASTP svg
NC_013716:31097003109700314990540206Citrobacter rodentium ICC168, complete genome5e-57230BLASTN svgBLASTP svg
NC_009778:17174581717458175914341686Enterobacter sakazakii ATCC BAA-894, complete genome3e-27131BLASTN svgBLASTP svg
NC_012962:3864000*3864000389221428215Photorhabdus asymbiotica, complete genome3e-21111BLASTN svgBLASTP svg
NC_015566:46621714662171468741325243Serratia sp. AS12 chromosome, complete genome5e-20107BLASTN svgBLASTP svg
NC_012962:34999003499900355871558816Photorhabdus asymbiotica, complete genome2e-19105BLASTN svgBLASTP svg
NC_012962:16616831661683171390552223Photorhabdus asymbiotica, complete genome2e-19105BLASTN svgBLASTP svg
NC_012962:25877562587756263945151696Photorhabdus asymbiotica, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_012962:48489948489951520630308Photorhabdus asymbiotica, complete genome4e-1487.7BLASTN svgBLASTP svg
NC_005966:92300892300895142228415Acinetobacter sp. ADP1, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_014306:19819561981956200836926414Erwinia billingiae Eb661, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_013716:5201097*5201097527659975503Citrobacter rodentium ICC168, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_014306:24763162476316249830421989Erwinia billingiae Eb661, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_005126:43337674333767439509961333Photorhabdus luminescens subsp. laumondii TTO1, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_005126:16138181613818165143837621Photorhabdus luminescens subsp. laumondii TTO1, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_005126:13154741315474135150136028Photorhabdus luminescens subsp. laumondii TTO1, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_003296:13413531341353136699725645Ralstonia solanacearum GMI1000 plasmid pGMI1000MP, complete4e-0867.9BLASTN svgBLASTP svg
NC_013592:45114784511478453986728390Dickeya dadantii Ech586, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_005126:58900058900061853029531Photorhabdus luminescens subsp. laumondii TTO1, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_004547:442927*44292748635443428Erwinia carotovora subsp. atroseptica SCRI1043, complete genome2e-0765.9BLASTN svgBLASTP svg