Pre_GI: BLASTN Hits

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Query: NC_006155:1756000 Yersinia pseudotuberculosis IP 32953, complete genome

Start: 1756000, End: 1794676, Length: 38677

Host Lineage: Yersinia pseudotuberculosis; Yersinia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is a fully virulent serotype I strain isolated from a human patient. Environmental bacterium that causes gastrointestinal disease. Specific virulence factors are encoded within pathogenicity islands (PAIs) that are required for the invasive phenotype associated with Yersinia infections. One key virulence plasmid contained by the three human-specific pathogens is pCD1/pYv, which encodes a type III secretion system for the delivery of virulence proteins that contribute to internalization into the host cell. This organism was first isolated in 1883 by Malassez and Vignal and is termed pseudotuberculosis since it causes lesions in the lung that are similar to those observed during tuberculosis infection. It is ubiquitous in the environment and is a food and waterborne pathogen that affects animals as well as humans by causing gastroenteritis like Yersinia enterocolitica.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_010634:17555481755548179542439877Yersinia pseudotuberculosis PB1/+, complete genome035980BLASTN svgBLASTP svg
NC_008149:28023922802392285367651285Yersinia pestis Nepal516, complete genome032780BLASTN svgBLASTP svg
NC_003143:16300001630000167609946100Yersinia pestis CO92, complete genome032780BLASTN svgBLASTP svg
NC_005810:14677721467772150509937328Yersinia pestis biovar Microtus str. 91001, complete genome032770BLASTN svgBLASTP svg
NC_004088:29663312966331300002833698Yersinia pestis KIM, complete genome032750BLASTN svgBLASTP svg
NC_010159:31206423120642314771827077Yersinia pestis Angola, complete genome018730BLASTN svgBLASTP svg
NC_008150:84472784472789009945373Yersinia pestis Antiqua, complete genome016860BLASTN svgBLASTP svg
NC_010465:89392189392191618522265Yersinia pseudotuberculosis YPIII, complete genome016720BLASTN svgBLASTP svg
NC_010465:28205002820500286978249283Yersinia pseudotuberculosis YPIII, complete genome015020BLASTN svgBLASTP svg
NC_006155:3805640*3805640384073735098Yersinia pseudotuberculosis IP 32953, complete genome012990BLASTN svgBLASTP svg
NC_010634:3720214*3720214375380933596Yersinia pseudotuberculosis PB1/+, complete genome012870BLASTN svgBLASTP svg
NC_008150:31790331790335159933697Yersinia pestis Antiqua, complete genome012780BLASTN svgBLASTP svg
NC_003143:1059580*1059580109467535096Yersinia pestis CO92, complete genome012780BLASTN svgBLASTP svg
NC_004088:3689000*3689000372277733778Yersinia pestis KIM, complete genome012760BLASTN svgBLASTP svg
NC_008149:3556999*3556999359064933651Yersinia pestis Nepal516, complete genome012760BLASTN svgBLASTP svg
NC_005810:39172543917254395265235399Yersinia pestis biovar Microtus str. 91001, complete genome012760BLASTN svgBLASTP svg
NC_010159:17246917246919591323445Yersinia pestis Angola, complete genome012640BLASTN svgBLASTP svg
NC_009832:19464011946401197178325383Serratia proteamaculans 568, complete genome0684BLASTN svgBLASTP svg
NC_015663:44479844447984447024622263Enterobacter aerogenes KCTC 2190 chromosome, complete genome4e-145523BLASTN svgBLASTP svg
NC_020181:96959996959999375524157Enterobacter aerogenes EA1509E, complete genome1e-142515BLASTN svgBLASTP svg
NC_015062:13035913035915526724909Rahnella sp. Y9602 plasmid pRAHAQ01, complete sequence3e-115424BLASTN svgBLASTP svg
NC_013956:45797594579759459970619948Pantoea ananatis LMG 20103 chromosome, complete genome2e-107398BLASTN svgBLASTP svg
NC_008563:31192843119284314330124018Escherichia coli APEC O1, complete genome6e-107396BLASTN svgBLASTP svg
NC_010067:25297502529750259435464605Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete2e-100375BLASTN svgBLASTP svg
NC_007348:20119572011957203523223276Ralstonia eutropha JMP134 chromosome 2, complete sequence9e-100373BLASTN svgBLASTP svg
NC_012962:35680463568046362047652431Photorhabdus asymbiotica, complete genome4e-96361BLASTN svgBLASTP svg
NC_005126:38120543812054388079068737Photorhabdus luminescens subsp. laumondii TTO1, complete genome5e-89337BLASTN svgBLASTP svg
NC_009648:14876921487692151904531354Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome2e-85325BLASTN svgBLASTP svg
NC_014121:18228951822895184662423730Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete5e-83317BLASTN svgBLASTP svg
NC_013282:20260832026083208019854116Cronobacter turicensis, complete genome3e-78301BLASTN svgBLASTP svg
NC_005126:49196894919689494365923971Photorhabdus luminescens subsp. laumondii TTO1, complete genome9e-63250BLASTN svgBLASTP svg
NC_012721:24000024000026711727118Burkholderia glumae BGR1 chromosome 2, complete genome1e-58236BLASTN svgBLASTP svg
NC_012721:13954171395417142220626790Burkholderia glumae BGR1 chromosome 2, complete genome1e-58236BLASTN svgBLASTP svg
NC_010552:59215459215461849626343Burkholderia ambifaria MC40-6 chromosome 2, complete sequence2e-57232BLASTN svgBLASTP svg
NC_014118:11714111171411119462023210Burkholderia sp. CCGE1002 chromosome chromosome 2, complete2e-51212BLASTN svgBLASTP svg
NC_010501:35757263575726360509929374Pseudomonas putida W619, complete genome3e-50208BLASTN svgBLASTP svg
NC_009648:34760003476000349829422295Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome4e-37165BLASTN svgBLASTP svg
NC_013961:62930762930765124921943Erwinia amylovora, complete genome4e-34155BLASTN svgBLASTP svg
NC_007712:1712667*1712667173153718871Sodalis glossinidius str. 'morsitans', complete genome2e-29139BLASTN svgBLASTP svg
NC_012880:31252613125261315478529525Dickeya dadantii Ech703, complete genome4e-28135BLASTN svgBLASTP svg
NC_010465:14271701427170145224325074Yersinia pseudotuberculosis YPIII, complete genome4e-28135BLASTN svgBLASTP svg
NC_013421:30939953093995311483420840Pectobacterium wasabiae WPP163, complete genome9e-23117BLASTN svgBLASTP svg
NC_004547:1873390*1873390193737663987Erwinia carotovora subsp. atroseptica SCRI1043, complete genome8e-1797.6BLASTN svgBLASTP svg
NC_012962:44270004427000445406927070Photorhabdus asymbiotica, complete genome3e-1695.6BLASTN svgBLASTP svg
NC_015224:38203383820338386215341816Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,3e-1695.6BLASTN svgBLASTP svg
NC_012962:26395002639500266574326244Photorhabdus asymbiotica, complete genome1e-1593.7BLASTN svgBLASTP svg
NC_013592:14245601424560145021625657Dickeya dadantii Ech586, complete genome5e-1591.7BLASTN svgBLASTP svg
NC_009778:19562251956225198255126327Enterobacter sakazakii ATCC BAA-894, complete genome5e-1591.7BLASTN svgBLASTP svg
NC_020181:2097066*2097066212464227577Enterobacter aerogenes EA1509E, complete genome2e-1489.7BLASTN svgBLASTP svg
NC_009648:2465613*2465613249720831596Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome8e-1487.7BLASTN svgBLASTP svg
NC_014170:57954579548259924646Xenorhabdus nematophila ATCC 19061 plasmid XNC1_p, complete8e-1487.7BLASTN svgBLASTP svg
NC_020064:29218092921809295042328615Serratia marcescens FGI94, complete genome3e-1385.7BLASTN svgBLASTP svg
NC_014837:2709813*2709813273364723835Pantoea sp. At-9b chromosome, complete genome3e-1385.7BLASTN svgBLASTP svg
NC_003198:1078113*1078113110191423802Salmonella enterica subsp. enterica serovar Typhi str. CT18,5e-1281.8BLASTN svgBLASTP svg
NC_004631:1881214*1881214190534324130Salmonella enterica subsp. enterica serovar Typhi Ty2, complete5e-1281.8BLASTN svgBLASTP svg
NC_006511:1808815*1808815183245923645Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC5e-1281.8BLASTN svgBLASTP svg
NC_010067:1829041*1829041185794928909Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete5e-1281.8BLASTN svgBLASTP svg
NC_010102:2020762*2020762204160320842Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,5e-1281.8BLASTN svgBLASTP svg
NC_011083:1173802*1173802119655222751Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,5e-1281.8BLASTN svgBLASTP svg
NC_011149:1035990*1035990106096324974Salmonella enterica subsp. enterica serovar Agona str. SL483,5e-1281.8BLASTN svgBLASTP svg
NC_018691:24107792410779243591125133Alcanivorax dieselolei B5 chromosome, complete genome5e-1281.8BLASTN svgBLASTP svg
NC_014228:22700002270000231663046631Xenorhabdus nematophila ATCC 19061, complete genome2e-1179.8BLASTN svgBLASTP svg
NC_008313:69169269169271552323832Ralstonia eutropha H16 chromosome 1, complete sequence2e-1179.8BLASTN svgBLASTP svg
NC_002947:4484824*4484824451609931276Pseudomonas putida KT2440, complete genome8e-1177.8BLASTN svgBLASTP svg
NC_009512:21086862108686214231433629Pseudomonas putida F1, complete genome8e-1177.8BLASTN svgBLASTP svg
NC_008027:23316172331617235762526009Pseudomonas entomophila L48, complete genome3e-1075.8BLASTN svgBLASTP svg
CP002185:234719*23471925468519967Escherichia coli W, complete genome1e-0973.8BLASTN svgBLASTP svg
NC_003197:1170746*1170746119097320228Salmonella typhimurium LT2, complete genome1e-0973.8BLASTN svgBLASTP svg
NC_007963:2555012*2555012257573920728Chromohalobacter salexigens DSM 3043, complete genome1e-0973.8BLASTN svgBLASTP svg
NC_009832:33130583313058333643323376Serratia proteamaculans 568, complete genome1e-0973.8BLASTN svgBLASTP svg
NC_012779:26198712619871264372223852Edwardsiella ictaluri 93-146, complete genome1e-0973.8BLASTN svgBLASTP svg
NC_015663:41296854129685415207222388Enterobacter aerogenes KCTC 2190 chromosome, complete genome1e-0973.8BLASTN svgBLASTP svg
NC_020260:19933441993344201786024517Cronobacter sakazakii Sp291, complete genome5e-0971.9BLASTN svgBLASTP svg
NC_013716:1138441*1138441116841529975Citrobacter rodentium ICC168, complete genome5e-0971.9BLASTN svgBLASTP svg
NC_012912:40718594071859411755145693Dickeya zeae Ech1591, complete genome5e-0971.9BLASTN svgBLASTP svg
NC_006155:33333033333303335118117879Yersinia pseudotuberculosis IP 32953, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_005810:33330003333000336198528986Yersinia pestis biovar Microtus str. 91001, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_005810:3021913*3021913304567123759Yersinia pestis biovar Microtus str. 91001, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_004088:38591733859173388653627364Yersinia pestis KIM, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_004088:15104671510467153309222626Yersinia pestis KIM, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_003143:74116974116977078329615Yersinia pestis CO92, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_003143:31912463191246321275521510Yersinia pestis CO92, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_007946:47797454779745482809648352Escherichia coli UTI89, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_008149:14403711440371146301222642Yersinia pestis Nepal516, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_008149:65070665070667964628941Yersinia pestis Nepal516, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_014323:81602781602784169625670Herbaspirillum seropedicae SmR1 chromosome, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_010634:32508103250810326864117832Yersinia pseudotuberculosis PB1/+, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_010465:73391673391676156927654Yersinia pseudotuberculosis YPIII, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_010159:409500*40950045168242183Yersinia pestis Angola, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_010159:25969525969528600726313Yersinia pestis Angola, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_008150:34300003430000345505925060Yersinia pestis Antiqua, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_008150:25747942574794259632821535Yersinia pestis Antiqua, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_008570:1986466*1986466201051824053Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome7e-0867.9BLASTN svgBLASTP svg
NC_007947:1556437*1556437158119324757Methylobacillus flagellatus KT, complete genome7e-0867.9BLASTN svgBLASTP svg
NC_008390:40731540731543675629442Burkholderia cepacia AMMD chromosome 1, complete sequence3e-0765.9BLASTN svgBLASTP svg
NC_015733:3736104*37361043837697101594Pseudomonas putida S16 chromosome, complete genome3e-0765.9BLASTN svgBLASTP svg
NC_000919:12545*125453292820384Treponema pallidum subsp. pallidum str. Nichols, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_010002:42566514256651428631629666Delftia acidovorans SPH-1, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_010161:21005002100500212209921600Bartonella tribocorum CIP 105476, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_010741:12542*125423292520384Treponema pallidum subsp. pallidum SS14, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_012779:20645822064582209112726546Edwardsiella ictaluri 93-146, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_014323:4619344*4619344465241733074Herbaspirillum seropedicae SmR1 chromosome, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_015563:33090973309097334276333667Delftia sp. Cs1-4 chromosome, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_015566:3659318*3659318367796918652Serratia sp. AS12 chromosome, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_014306:67988867988870467824791Erwinia billingiae Eb661, complete genome5e-0661.9BLASTN svgBLASTP svg
NC_009952:592000*59200063739445395Dinoroseobacter shibae DFL 12, complete genome5e-0661.9BLASTN svgBLASTP svg
NC_003143:41057544105754412910623353Yersinia pestis CO92, complete genome5e-0661.9BLASTN svgBLASTP svg