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Query: NC_005810:2043730 Yersinia pestis biovar Microtus str. 91001, complete genome

Start: 2043730, End: 2064099, Length: 20370

Host Lineage: Yersinia pestis; Yersinia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Causative agent of plague. Specific virulence factors are encoded within pathogenicity islands (PAIs) that are required for the invasive phenotype associated with Yersinia infections. One key virulence plasmid contained by the three human-specific pathogens is pCD1/pYv, which encodes a type III secretion system for the delivery of virulence proteins that contribute to internalization into the host cell. It is the causative agent of plague (bubonic and pulmonary) a devastating disease which has killed millions worldwide. The organism can be transmitted from rats to humans through the bite of an infected flea or from human-to-human through the air during widespread infection. Yersinia pestis is an extremely pathogenic organism that requires very few numbers in order to cause disease, and is often lethal if left untreated. The organism is enteroinvasive, and can survive and propagate in macrophages prior to spreading systemically throughout the host. Yersinia pestis consists of three biotypes or serovars, Antiqua, Mediavalis, and Orientalis, that are associated with three major pandemics throughout human history. pMT1 encodes a protein, murine toxin, that aids rat-to-human transmission by enhancing survival of the organism in the flea midgut. Yersinia pestis also contains a PAI on the chromosome that is similar to the SPI-2 PAI from Salmonella that allows intracellular survival in the organism.

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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_007760:36554333655433369618740755Anaeromyxobacter dehalogenans 2CP-C, complete genome3e-18101BLASTN svgBLASTP svg
NC_020409:11737961173796119659322798Desulfovibrio piezophilus str. nov C1TLV30 chromosome, complete4e-1177.8BLASTN svgBLASTP svg
NC_011769:37124973712497373232819832Desulfovibrio vulgaris str. 'Miyazaki F', complete genome6e-0763.9BLASTN svgBLASTP svg
NC_013592:32128343212834324883336000Dickeya dadantii Ech586, complete genome7e-1693.7BLASTN svgBLASTP svg
NC_013592:2968500*2968500300769039191Dickeya dadantii Ech586, complete genome8e-25123BLASTN svgBLASTP svg
NC_004431:27986827986832229542428Escherichia coli CFT073, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_014840:76232762329583419603Pantoea sp. At-9b plasmid pPAT9B03, complete sequence1e-23119BLASTN svgBLASTP svg
NC_015379:35706583570658359449623839Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,6e-1073.8BLASTN svgBLASTP svg
NC_021066:1712905*1712905175859645692Raoultella ornithinolytica B6, complete genome6e-38167BLASTN svgBLASTP svg
NC_020211:16210001621000164274521746Serratia marcescens WW4, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_004460:97373897373899864424907Vibrio vulnificus CMCP6 chromosome II, complete sequence4e-1177.8BLASTN svgBLASTP svg
NC_015224:14402831440283145849618214Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,3e-27131BLASTN svgBLASTP svg
NC_010159:31692663169266318806418799Yersinia pestis Angola, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_010159:29555622955562297845722896Yersinia pestis Angola, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_008150:15436351543635156595322319Yersinia pestis Antiqua, complete genome031630BLASTN svgBLASTP svg
NC_008150:90500090500092909924100Yersinia pestis Antiqua, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_005810:15200001520000154409924100Yersinia pestis biovar Microtus str. 91001, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_003143:22586362258636227843519800Yersinia pestis CO92, complete genome031640BLASTN svgBLASTP svg
NC_003143:16910001691000171055719558Yersinia pestis CO92, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_004088:25410332541033256388322851Yersinia pestis KIM, complete genome028880BLASTN svgBLASTP svg
NC_004088:29370772937077296291925843Yersinia pestis KIM, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_008149:16699211669921169183421914Yersinia pestis Nepal516, complete genome031660BLASTN svgBLASTP svg
NC_008149:27731392773139279513521997Yersinia pestis Nepal516, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_006155:23341222334122235510620985Yersinia pseudotuberculosis IP 32953, complete genome031140BLASTN svgBLASTP svg
NC_006155:18079021807902182857520674Yersinia pseudotuberculosis IP 32953, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_006155:29795002979500301649636997Yersinia pseudotuberculosis IP 32953, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_010634:18095001809500182909919600Yersinia pseudotuberculosis PB1/+, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_010634:2252329*2252329227409821770Yersinia pseudotuberculosis PB1/+, complete genome031140BLASTN svgBLASTP svg
NC_010634:28946312894631293584741217Yersinia pseudotuberculosis PB1/+, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_010465:28205002820500286978249283Yersinia pseudotuberculosis YPIII, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_010465:24286202428620244757218953Yersinia pseudotuberculosis YPIII, complete genome028530BLASTN svgBLASTP svg