Pre_GI: BLASTN Hits

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Query: NC_005140:660305 Vibrio vulnificus YJ016 chromosome II, complete sequence

Start: 660305, End: 680923, Length: 20619

Host Lineage: Vibrio vulnificus; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This is a Biotype 1 hospital isolate from Taiwan. It contains larger chromosomes and >1000 genes as compared to Vibrio cholerae and contains a conjugative plasmid, pYJ016. There are numerous virulence factors including a cytolysin, protease, capsular polysaccharide as well as iron-uptake systems encoded in the genome. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Organisms of this species are opportunistic pathogens that can attack immunocompromised patients and causes gastroenteritis (inflammation of mucous membranes of stomach and intestine), wound infections, and primary septicemia (spread of the organism through the blood). This organism is the major cause of death from eating raw oysters, especially in people with liver damage. It only affects humans and other primates.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_013416:668152*66815269868530534Aggregatibacter actinomycetemcomitans D11S-1, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_012913:16703416703419178024747Aggregatibacter aphrophilus NJ8700, complete genome6e-1073.8BLASTN svgBLASTP svg
NC_013716:4306695*4306695439827491580Citrobacter rodentium ICC168, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_002940:1065246*1065246108809922854Haemophilus ducreyi 35000HP, complete genome5e-29137BLASTN svgBLASTP svg
NC_004605:74100074100076153320534Vibrio parahaemolyticus RIMD 2210633 chromosome II, complete2e-43184BLASTN svgBLASTP svg
NC_004460:816878168710173520049Vibrio vulnificus CMCP6 chromosome II, complete sequence020030BLASTN svgBLASTP svg
NC_010465:73391673391676156927654Yersinia pseudotuberculosis YPIII, complete genome2e-0661.9BLASTN svgBLASTP svg