Pre_GI: BLASTN Hits

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Query: NC_005140:340000 Vibrio vulnificus YJ016 chromosome II, complete sequence

Start: 340000, End: 362329, Length: 22330

Host Lineage: Vibrio vulnificus; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This is a Biotype 1 hospital isolate from Taiwan. It contains larger chromosomes and >1000 genes as compared to Vibrio cholerae and contains a conjugative plasmid, pYJ016. There are numerous virulence factors including a cytolysin, protease, capsular polysaccharide as well as iron-uptake systems encoded in the genome. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Organisms of this species are opportunistic pathogens that can attack immunocompromised patients and causes gastroenteritis (inflammation of mucous membranes of stomach and intestine), wound infections, and primary septicemia (spread of the organism through the blood). This organism is the major cause of death from eating raw oysters, especially in people with liver damage. It only affects humans and other primates.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_004460:16188921618892163876819877Vibrio vulnificus CMCP6 chromosome II, complete sequence011420BLASTN svgBLASTP svg
NC_004603:18975321897532193607538544Vibrio parahaemolyticus RIMD 2210633 chromosome I, complete01088BLASTN svgBLASTP svg
NC_009784:25385225385227160217751Vibrio harveyi ATCC BAA-1116 chromosome II, complete sequence0896BLASTN svgBLASTP svg
NC_002506:82240182240184494222542Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, complete0749BLASTN svgBLASTP svg
NC_011186:515214*51521454656031347Vibrio fischeri MJ11 chromosome II, complete sequence6e-106392BLASTN svgBLASTP svg
NC_008321:46318664631866465846026595Shewanella sp. MR-4, complete genome1e-82315BLASTN svgBLASTP svg
NC_020063:974369743612048123046Enterobacteriaceae bacterium strain FGI 57, complete genome2e-78301BLASTN svgBLASTP svg
NC_013716:44082014408201443527827078Citrobacter rodentium ICC168, complete genome4e-76293BLASTN svgBLASTP svg
NC_008577:49074974907497493408326587Shewanella sp. ANA-3 chromosome 1, complete sequence4e-73283BLASTN svgBLASTP svg
NC_002506:32455232455235839733846Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, complete1e-66262BLASTN svgBLASTP svg
NC_002506:37062937062943982869200Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, complete1e-66262BLASTN svgBLASTP svg
NC_011740:4007000*4007000403180124802Escherichia fergusonii ATCC 35469, complete genome3e-64254BLASTN svgBLASTP svg
NC_009792:46589094658909468286123953Citrobacter koseri ATCC BAA-895, complete genome5e-60240BLASTN svgBLASTP svg
NC_002655:4606000*4606000462939223393Escherichia coli O157:H7 EDL933, complete genome7e-53216BLASTN svgBLASTP svg
CU928160:3862935*3862935388577322839Escherichia coli IAI1 chromosome, complete genome7e-53216BLASTN svgBLASTP svg
NC_002695:4537000*4537000455962722628Escherichia coli O157:H7 str. Sakai, complete genome2e-50208BLASTN svgBLASTP svg
NC_004337:3590323*35903233952993362671Shigella flexneri 2a str. 301, complete genome2e-50208BLASTN svgBLASTP svg
NC_004337:3761865*3761865378609924235Shigella flexneri 2a str. 301, complete genome2e-50208BLASTN svgBLASTP svg
NC_004741:3992384*3992384401736124978Shigella flexneri 2a str. 2457T, complete genome2e-50208BLASTN svgBLASTP svg
NC_008258:3995553*3995553402149425942Shigella flexneri 5 str. 8401, complete genome2e-50208BLASTN svgBLASTP svg
NC_011751:4251296*4251296427504623751Escherichia coli UMN026 chromosome, complete genome2e-50208BLASTN svgBLASTP svg
NC_011080:3875320*3875320390054525226Salmonella enterica subsp. enterica serovar Newport str. SL254,7e-50206BLASTN svgBLASTP svg
NC_011149:3822000*3822000384676224763Salmonella enterica subsp. enterica serovar Agona str. SL483,3e-49204BLASTN svgBLASTP svg
CU928145:4167043*4167043419159624554Escherichia coli 55989 chromosome, complete genome4e-48200BLASTN svgBLASTP svg
NC_011748:4167043*4167043419159624554Escherichia coli 55989, complete genome4e-48200BLASTN svgBLASTP svg
AP010958:4668181*4668181469259924419Escherichia coli O103:H2 str. 12009 DNA, complete genome1e-45192BLASTN svgBLASTP svg
NC_004631:3910451*3910451393705126601Salmonella enterica subsp. enterica serovar Typhi Ty2, complete4e-45190BLASTN svgBLASTP svg
NC_003198:3924952*3924952395155226601Salmonella enterica subsp. enterica serovar Typhi str. CT18,4e-45190BLASTN svgBLASTP svg
NC_007613:3637832*3637832366214824317Shigella boydii Sb227, complete genome3e-43184BLASTN svgBLASTP svg
NC_010658:3774110*3774110379937225263Shigella boydii CDC 3083-94, complete genome3e-43184BLASTN svgBLASTP svg
NC_008253:3896704*3896704392023823535Escherichia coli 536, complete genome6e-41176BLASTN svgBLASTP svg
NC_007606:3784847*3784847380859923753Shigella dysenteriae Sd197, complete genome6e-41176BLASTN svgBLASTP svg
CP002516:88500*8850011436625867Escherichia coli KO11, complete genome6e-41176BLASTN svgBLASTP svg
CP002185:3998112*3998112402163723526Escherichia coli W, complete genome6e-41176BLASTN svgBLASTP svg
NC_003197:3902500*3902500392838425885Salmonella typhimurium LT2, complete genome1e-39172BLASTN svgBLASTP svg
NC_010102:38515003851500387645224953Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,1e-39172BLASTN svgBLASTP svg
NC_011083:3915500*3915500393961024111Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,1e-39172BLASTN svgBLASTP svg
NC_004431:4223232*4223232424609922868Escherichia coli CFT073, complete genome2e-38168BLASTN svgBLASTP svg
NC_007384:3956465*3956465398127224808Shigella sonnei Ss046, complete genome2e-38168BLASTN svgBLASTP svg
NC_007946:4050762*4050762407361822857Escherichia coli UTI89, complete genome2e-38168BLASTN svgBLASTP svg
NC_008563:40835584083558410710723550Escherichia coli APEC O1, complete genome2e-38168BLASTN svgBLASTP svg
NC_009801:4108179*4108179413170423526Escherichia coli E24377A, complete genome2e-38168BLASTN svgBLASTP svg
NC_006511:3690828*3690828371609925272Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC6e-38167BLASTN svgBLASTP svg
NC_006905:3845000*3845000386969524696Salmonella enterica subsp. enterica serovar Choleraesuis str2e-37165BLASTN svgBLASTP svg
NC_010498:4031500*4031500405311121612Escherichia coli SMS-3-5, complete genome4e-36161BLASTN svgBLASTP svg
NC_011750:4307166*4307166433102623861Escherichia coli IAI39 chromosome, complete genome4e-36161BLASTN svgBLASTP svg
NC_010067:38469623846962387119224231Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete9e-31143BLASTN svgBLASTP svg
NC_013456:17430461743046176911826073Vibrio sp. Ex25 chromosome 1, complete genome3e-27131BLASTN svgBLASTP svg
NC_005139:178400017840001927839143840Vibrio vulnificus YJ016 chromosome I, complete sequence3e-27131BLASTN svgBLASTP svg
NC_004459:2443000*24430002588599145600Vibrio vulnificus CMCP6 chromosome I, complete sequence3e-27131BLASTN svgBLASTP svg
NC_009800:3821824*3821824384534923526Escherichia coli HS, complete genome1e-26129BLASTN svgBLASTP svg
NC_010468:80000*8000010593725938Escherichia coli ATCC 8739, complete genome1e-26129BLASTN svgBLASTP svg
NC_002506:298868*29886831909920232Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, complete2e-25125BLASTN svgBLASTP svg
NC_013456:1819421*1819421184038720967Vibrio sp. Ex25 chromosome 1, complete genome8e-25123BLASTN svgBLASTP svg
AC_000091:3827856*3827856385515527300Escherichia coli W3110 DNA, complete genome2e-22115BLASTN svgBLASTP svg
NC_000913:3786124*3786124381459928476Escherichia coli K12, complete genome2e-22115BLASTN svgBLASTP svg
NC_009092:1047500*1047500107272925230Shewanella loihica PV-4, complete genome2e-22115BLASTN svgBLASTP svg
NC_010473:3883701*3883701391159927899Escherichia coli str. K-12 substr. DH10B, complete genome2e-22115BLASTN svgBLASTP svg
NC_009997:2967521*2967521298899221472Shewanella baltica OS195, complete genome8e-19103BLASTN svgBLASTP svg
NC_018679:3843870*3843870386704523176Alteromonas macleodii str. 'Balearic Sea AD45' chromosome, complete2e-1695.6BLASTN svgBLASTP svg
NC_011753:20185002018500203623417735Vibrio splendidus LGP32 chromosome 1, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_014366:3653190*3653190367610422915Gamma proteobacterium HdN1, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_011753:16807381680738170074920012Vibrio splendidus LGP32 chromosome 1, complete genome5e-1487.7BLASTN svgBLASTP svg
NC_009901:42162064216206423672120516Shewanella pealeana ATCC 700345, complete genome5e-1487.7BLASTN svgBLASTP svg
NC_009901:22722062272206230998537780Shewanella pealeana ATCC 700345, complete genome5e-1487.7BLASTN svgBLASTP svg
NC_009654:4253431*4253431427667923249Marinomonas sp. MWYL1, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_013456:1843000*1843000186410221103Vibrio sp. Ex25 chromosome 1, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_013508:63914639148559921686Edwardsiella tarda EIB202, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_015276:14260001426000144883022831Marinomonas mediterranea MMB-1 chromosome, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_010334:26152602615260265659941340Shewanella halifaxensis HAW-EB4, complete genome4e-1177.8BLASTN svgBLASTP svg
NC_006349:2311817*2311817233999928183Burkholderia mallei ATCC 23344 chromosome 2, complete sequence7e-1073.8BLASTN svgBLASTP svg
NC_006351:3159630*3159630318599926370Burkholderia pseudomallei K96243 chromosome 2, complete sequence7e-1073.8BLASTN svgBLASTP svg
NC_007435:1825741*1825741184876423024Burkholderia pseudomallei 1710b chromosome II, complete sequence7e-1073.8BLASTN svgBLASTP svg
NC_007650:29017512901751292799926249Burkholderia thailandensis E264 chromosome II, complete sequence7e-1073.8BLASTN svgBLASTP svg
NC_008784:1151305*1151305117501923715Burkholderia mallei SAVP1 chromosome I, complete sequence7e-1073.8BLASTN svgBLASTP svg
NC_008835:14832371483237150346620230Burkholderia mallei NCTC 10229 chromosome I, complete sequence7e-1073.8BLASTN svgBLASTP svg
NC_009075:3113393*3113393313999926607Burkholderia pseudomallei 668 chromosome II, complete sequence7e-1073.8BLASTN svgBLASTP svg
NC_009078:3087759*3087759311399926241Burkholderia pseudomallei 1106a chromosome II, complete sequence7e-1073.8BLASTN svgBLASTP svg
NC_009079:2339756*2339756236599926244Burkholderia mallei NCTC 10247 chromosome I, complete sequence7e-1073.8BLASTN svgBLASTP svg
NC_014923:5787493*5787493583009942607Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, complete3e-0971.9BLASTN svgBLASTP svg
NC_009997:26996442699644272218322540Shewanella baltica OS195, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_004547:164000*16400019143427435Erwinia carotovora subsp. atroseptica SCRI1043, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_008321:21900002190000221007020071Shewanella sp. MR-4, complete genome3e-0661.9BLASTN svgBLASTP svg