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Query: NC_005140:660305:676830 Vibrio vulnificus YJ016 chromosome II, complete sequence

Start: 676830, End: 677978, Length: 1149

Host Lineage: Vibrio vulnificus; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This is a Biotype 1 hospital isolate from Taiwan. It contains larger chromosomes and >1000 genes as compared to Vibrio cholerae and contains a conjugative plasmid, pYJ016. There are numerous virulence factors including a cytolysin, protease, capsular polysaccharide as well as iron-uptake systems encoded in the genome. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Organisms of this species are opportunistic pathogens that can attack immunocompromised patients and causes gastroenteritis (inflammation of mucous membranes of stomach and intestine), wound infections, and primary septicemia (spread of the organism through the blood). This organism is the major cause of death from eating raw oysters, especially in people with liver damage. It only affects humans and other primates.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004460:81687:9824998249993581110Vibrio vulnificus CMCP6 chromosome II, complete sequenceFlp pilus assembly protein TadD0654
NC_014966:638355:6548986548986559561059Vibrio vulnificus MO6-24/O chromosome II, complete sequenceflp pilus assembly protein TadD, contains TPR repeat2e-177622
NC_004605:741000:7579517579517590391089Vibrio parahaemolyticus RIMD 2210633 chromosome II, completeputative nonspecific tight adherence protein TadD4e-111401
NC_015224:3820338:384760338476033848352750Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,putative tight adherance operon protein2e-1170.5
NC_008800:3955284:396932339693233970090768Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,putative tight adherance operon protein3e-1066.6
NC_012913:167034:174340174340175101762Aggregatibacter aphrophilus NJ8700, complete genomeTadD6e-0858.9
NC_016513:974402:984981984981985742762Aggregatibacter actinomycetemcomitans ANH9381 chromosome, completeFlp pilus assembly protein TadD2e-0757.4
NC_013416:668152:678721678721679482762Aggregatibacter actinomycetemcomitans D11S-1, complete genomeTadD2e-0757
NC_010159:259695:273409273409274179771Yersinia pestis Angola, complete genomeputative lipoprotein5e-0755.8
NC_006155:3992818:401166840116684012438771Yersinia pseudotuberculosis IP 32953, complete genomehypothetical protein3e-0653.1
NC_008149:650706:658413658413659183771Yersinia pestis Nepal516, complete genomehypothetical protein3e-0653.1
NC_004088:3859173:387288738728873873657771Yersinia pestis KIM, complete genomehypothetical protein3e-0653.1
NC_005810:3333000:334081733408173341587771Yersinia pestis biovar Microtus str. 91001, complete genomeTPR repeat-containing protein3e-0653.1
NC_008150:3430000:344376934437693444539771Yersinia pestis Antiqua, complete genomehypothetical protein3e-0653.1
NC_009381:522731:530436530436531206771Yersinia pestis Pestoides F chromosome, complete genomehypothetical protein3e-0653.1
NC_014029:792719:800419800419801189771Yersinia pestis Z176003 chromosome, complete genomehypothetical protein3e-0653.1
NC_017154:734875:742581742581743351771Yersinia pestis D106004 chromosome, complete genomehypothetical protein3e-0653.1
NC_017160:737000:744760744760745530771Yersinia pestis D182038 chromosome, complete genomehypothetical protein3e-0653.1
NC_017168:341233:355657355657356427771Yersinia pestis A1122 chromosome, complete genomehypothetical protein3e-0653.1
NC_017265:3724500:373824737382473739017771Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,Flp pilus assembly protein TadD, contains TPRrepeat3e-0653.1
NC_009708:692508:700268700268701038771Yersinia pseudotuberculosis IP 31758 chromosome, complete genomelipoprotein9e-0651.6