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Query: NC_005140:660305:663794 Vibrio vulnificus YJ016 chromosome II, complete sequence

Start: 663794, End: 667654, Length: 3861

Host Lineage: Vibrio vulnificus; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This is a Biotype 1 hospital isolate from Taiwan. It contains larger chromosomes and >1000 genes as compared to Vibrio cholerae and contains a conjugative plasmid, pYJ016. There are numerous virulence factors including a cytolysin, protease, capsular polysaccharide as well as iron-uptake systems encoded in the genome. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Organisms of this species are opportunistic pathogens that can attack immunocompromised patients and causes gastroenteritis (inflammation of mucous membranes of stomach and intestine), wound infections, and primary septicemia (spread of the organism through the blood). This organism is the major cause of death from eating raw oysters, especially in people with liver damage. It only affects humans and other primates.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014966:638355:6418456418456457053861Vibrio vulnificus MO6-24/O chromosome II, complete sequencehypothetical protein02477
NC_004460:81687:8528785287890363750Vibrio vulnificus CMCP6 chromosome II, complete sequencehypothetical protein02443
NC_004605:741000:7445507445507476123063Vibrio parahaemolyticus RIMD 2210633 chromosome II, completehypothetical protein0713
NC_009092:1989977:2001262200126220053654104Shewanella loihica PV-4, complete genomeProprotein convertase, P3e-1585.1
NC_009831:3092126:3098020309802031021114092Shewanella sediminis HAW-EB3, complete genomeproprotein convertase, P6e-1274.3
NC_008358:2638245:2652905265290526542361332Hyphomonas neptunium ATCC 15444, complete genomehypothetical protein2e-1172.4
NC_007912:1019682:10322881032288104271210425Saccharophagus degradans 2-40, complete genomehypothetical protein4e-1171.6
NC_013166:32474:4243342433462393807Kangiella koreensis DSM 16069, complete genomeProprotein convertase P4e-1171.6
NC_010334:3040589:3047155304715530512464092Shewanella halifaxensis HAW-EB4, complete genomeProprotein convertase P1e-0967
NC_020291:1122282:1124174112417411256611488Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomesecreted metalloprotease8e-0963.9
NC_004460:1313468:1314417131441713169542538Vibrio vulnificus CMCP6 chromosome II, complete sequencehypothetical protein9e-0963.9
NC_007645:2112622:21126222112622212455211931Hahella chejuensis KCTC 2396, complete genomeRhs family protein1e-0759.7
NC_007645:5747721:57599405759940577152811589Hahella chejuensis KCTC 2396, complete genomeRhs family protein3e-0758.5
NC_015277:2568781:25687812568781258442815648Sphingobacterium sp. 21 chromosome, complete genomeconserved repeat domain protein2e-0656.2
NC_014958:3094500:3113701311370131193435643Deinococcus maricopensis DSM 21211 chromosome, complete genomehypothetical protein4e-0655.1
NC_017297:2143000:2156080215608021582992220Clostridium botulinum F str. 230613 chromosome, complete genomehypothetical protein4e-0655.1
NC_009699:2142177:2155980215598021581992220Clostridium botulinum F str. Langeland chromosome, complete genomehypothetical protein4e-0655.1