Pre_GI: BLASTP Hits

Some Help

Query: NC_004741:2081649:2091678 Shigella flexneri 2a str. 2457T, complete genome

Start: 2091678, End: 2092277, Length: 600

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This is a highly virulent strain that has been widely used for genetic and clinical research. Causes enteric disease. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017328:2153083:216311221631122163711600Shigella flexneri 2002017 chromosome, complete genomehypothetical protein5e-99359
NC_004337:2098736:210876521087652109364600Shigella flexneri 2a str. 301, complete genomehypothetical protein5e-99359
NC_008258:2100646:211067521106752111325651Shigella flexneri 5 str. 8401, complete genomehypothetical protein6e-99359
NC_014733:1073540:1087325108732510891091785Methylovorus sp. MP688 chromosome, complete genomedolichyl-phosphate-mannose-protein mannosyltransferase protein3e-1065.1