Pre_GI: BLASTN Hits

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Query: NC_004632:28470 Pseudomonas syringae pv. tomato str. DC3000 plasmid pDC3000B,

Start: 28470, End: 51864, Length: 23395

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_007275:112112521125Pseudomonas syringae pv. phaseolicola 1448A small plasmid, complete05063BLASTN svgBLASTP svg
NC_005773:5149768*5149768521141661649Pseudomonas syringae pv. phaseolicola 1448A, complete genome0827BLASTN svgBLASTP svg
NC_004578:60899586089958612236632409Pseudomonas syringae pv. tomato str. DC3000, complete genome02817BLASTN svgBLASTP svg
NC_004578:51921105192110522245930350Pseudomonas syringae pv. tomato str. DC3000, complete genome03794BLASTN svgBLASTP svg
NC_004578:21246821246824209929632Pseudomonas syringae pv. tomato str. DC3000, complete genome03889BLASTN svgBLASTP svg
NC_004578:25604732560473258881228340Pseudomonas syringae pv. tomato str. DC3000, complete genome03889BLASTN svgBLASTP svg
NC_004578:38498353849835387260722773Pseudomonas syringae pv. tomato str. DC3000, complete genome03889BLASTN svgBLASTP svg
NC_004578:40613724061372409399732626Pseudomonas syringae pv. tomato str. DC3000, complete genome03889BLASTN svgBLASTP svg
NC_004578:47813264781326481642335098Pseudomonas syringae pv. tomato str. DC3000, complete genome03889BLASTN svgBLASTP svg
NC_004578:63347356334735636397929245Pseudomonas syringae pv. tomato str. DC3000, complete genome03889BLASTN svgBLASTP svg
NC_004578:895019*89501992169226674Pseudomonas syringae pv. tomato str. DC3000, complete genome03889BLASTN svgBLASTP svg
NC_004578:93486793486796406929203Pseudomonas syringae pv. tomato str. DC3000, complete genome03889BLASTN svgBLASTP svg
NC_004578:1190000*1190000121945029451Pseudomonas syringae pv. tomato str. DC3000, complete genome03891BLASTN svgBLASTP svg
NC_004578:20738207386960648869Pseudomonas syringae pv. tomato str. DC3000, complete genome03891BLASTN svgBLASTP svg
NC_004578:5336773*5336773541660879836Pseudomonas syringae pv. tomato str. DC3000, complete genome03891BLASTN svgBLASTP svg
NC_005773:11353741135374117481539442Pseudomonas syringae pv. phaseolicola 1448A, complete genome4e-153549BLASTN svgBLASTP svg
NC_005773:4282840*4282840431412131282Pseudomonas syringae pv. phaseolicola 1448A, complete genome1e-116428BLASTN svgBLASTP svg
NC_021150:898428*89842892559527168Azotobacter vinelandii CA6, complete genome8e-1383.8BLASTN svgBLASTP svg
NC_021150:5019887*5019887505160731721Azotobacter vinelandii CA6, complete genome8e-1383.8BLASTN svgBLASTP svg
NC_021150:36986963698696372152222827Azotobacter vinelandii CA6, complete genome8e-1383.8BLASTN svgBLASTP svg
NC_012560:898416*89841692558327168Azotobacter vinelandii DJ, complete genome8e-1383.8BLASTN svgBLASTP svg
NC_012560:5019900*5019900505162031721Azotobacter vinelandii DJ, complete genome8e-1383.8BLASTN svgBLASTP svg
NC_012560:36986973698697372152322827Azotobacter vinelandii DJ, complete genome8e-1383.8BLASTN svgBLASTP svg
NC_015222:31371673137167315861921453Nitrosomonas sp. AL212 chromosome, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_015222:1905194*1905194192907923886Nitrosomonas sp. AL212 chromosome, complete genome7e-0763.9BLASTN svgBLASTP svg