Pre_GI: BLASTN Hits

Some Help

Query: NC_004603:2235142 Vibrio parahaemolyticus RIMD 2210633 chromosome I, complete

Start: 2235142, End: 2255715, Length: 20574

Host Lineage: Vibrio parahaemolyticus; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This is a clinical strain isolated in 1996 in Osaka, Japan. It contains a type III secretion system which may enable colonization and penetration of the host intestinal epithelial layer, and possibly lead to septicemia. The genome contains multipe chromosomal rearrangements as compared to Vibrio cholerae. The organism also produces a hemolysin (thermostable direct hemolysin - TDH) that is particular to Vibrio parahaemolyticus. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. This species causes food poisoning (gastroenteritis) in countries that have elevated levels of seafood consumption such as Japan.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_010170:1661915*1661915168523723323Bordetella petrii, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_012880:31252613125261315478529525Dickeya dadantii Ech703, complete genome1e-0560BLASTN svgBLASTP svg
NC_012489:1797032*1797032181538418353Gemmatimonas aurantiaca T-27, complete genome1e-0560BLASTN svgBLASTP svg
NC_014532:1873169*1873169189841425246Halomonas elongata DSM 2581, complete genome1e-0560BLASTN svgBLASTP svg
NC_007947:1556437*1556437158119324757Methylobacillus flagellatus KT, complete genome1e-0560BLASTN svgBLASTP svg
NC_013421:30939953093995311483420840Pectobacterium wasabiae WPP163, complete genome1e-0560BLASTN svgBLASTP svg
NC_012660:41494874149487417527325787Pseudomonas fluorescens SBW25 chromosome, complete genome4e-1487.7BLASTN svgBLASTP svg
NC_015733:3736104*37361043837697101594Pseudomonas putida S16 chromosome, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_007954:1823085*1823085184470821624Shewanella denitrificans OS217, complete genome3e-18101BLASTN svgBLASTP svg
NC_007712:1712667*1712667173153718871Sodalis glossinidius str. 'morsitans', complete genome1e-0560BLASTN svgBLASTP svg
NC_013889:1623697*1623697165176828072Thioalkalivibrio sp. K90mix chromosome, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_013457:1703201*1703201172926026060Vibrio sp. Ex25 chromosome 2, complete genome4e-45190BLASTN svgBLASTP svg
NC_013457:979102*97910299831619215Vibrio sp. Ex25 chromosome 2, complete genome1e-42182BLASTN svgBLASTP svg
NC_016010:1822212*1822212190411881907Xanthomonas axonopodis pv. citrumelo F1 chromosome, complete1e-0560BLASTN svgBLASTP svg
NC_003902:1858349*1858349191581657468Xanthomonas campestris pv. campestris str. ATCC 33913, complete1e-0560BLASTN svgBLASTP svg