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Query: NC_004578:4869673 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 4869673, End: 4888610, Length: 18938

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.

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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_004578:21246821246824209929632Pseudomonas syringae pv. tomato str. DC3000, complete genome01108BLASTN svgBLASTP svg
NC_015379:90890490890497110662203Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,2e-77297BLASTN svgBLASTP svg
NC_015379:25750002575000259943424435Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,2e-77297BLASTN svgBLASTP svg
NC_004578:35970833597083362009923017Pseudomonas syringae pv. tomato str. DC3000, complete genome2e-65258BLASTN svgBLASTP svg
NC_015379:46303674630367466559935233Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,2e-31145BLASTN svgBLASTP svg
NC_005773:1333863*1333863135559921737Pseudomonas syringae pv. phaseolicola 1448A, complete genome1e-1799.6BLASTN svgBLASTP svg
NC_009512:21086862108686214231433629Pseudomonas putida F1, complete genome1e-1799.6BLASTN svgBLASTP svg
NC_015740:26143172614317265004935733Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, complete1e-1799.6BLASTN svgBLASTP svg
NC_004578:20738207386960648869Pseudomonas syringae pv. tomato str. DC3000, complete genome4e-1797.6BLASTN svgBLASTP svg
NC_002947:49943354994335504935655022Pseudomonas putida KT2440, complete genome4e-1797.6BLASTN svgBLASTP svg
NC_002947:41675004167500424373376234Pseudomonas putida KT2440, complete genome4e-1797.6BLASTN svgBLASTP svg
NC_015556:13043713043716194631510Pseudomonas fulva 12-X chromosome, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_015410:96952696952699007820553Pseudomonas mendocina NK-01 chromosome, complete genome6e-1693.7BLASTN svgBLASTP svg
NC_004578:5336773*5336773541660879836Pseudomonas syringae pv. tomato str. DC3000, complete genome6e-1693.7BLASTN svgBLASTP svg
NC_020209:19495001949500197652927030Pseudomonas poae RE*1-1-14, complete genome4e-1487.7BLASTN svgBLASTP svg
NC_010501:26095672609567264709937533Pseudomonas putida W619, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_014924:30654303065430309278427355Pseudoxanthomonas suwonensis 11-1 chromosome, complete genome6e-1383.8BLASTN svgBLASTP svg
NC_013959:82686882686887209945232Sideroxydans lithotrophicus ES-1 chromosome, complete genome9e-1279.8BLASTN svgBLASTP svg
NC_007005:51543175154317518283828522Pseudomonas syringae pv. syringae B728a, complete genome9e-1279.8BLASTN svgBLASTP svg
NC_004578:63347356334735636397929245Pseudomonas syringae pv. tomato str. DC3000, complete genome9e-1279.8BLASTN svgBLASTP svg
NC_007005:98488*9848813693138444Pseudomonas syringae pv. syringae B728a, complete genome4e-1177.8BLASTN svgBLASTP svg
NC_002947:737924*73792476633928416Pseudomonas putida KT2440, complete genome1e-1075.8BLASTN svgBLASTP svg
NC_012560:42019694201969423232530357Azotobacter vinelandii DJ, complete genome1e-1075.8BLASTN svgBLASTP svg
NC_013947:16659941665994169310927116Stackebrandtia nassauensis DSM 44728 chromosome, complete genome1e-1075.8BLASTN svgBLASTP svg
NC_021150:42019654201965423232130357Azotobacter vinelandii CA6, complete genome1e-1075.8BLASTN svgBLASTP svg
NC_012489:29139202913920293688022961Gemmatimonas aurantiaca T-27, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_015138:11430151143015116543022416Acidovorax avenae subsp. avenae ATCC 19860 chromosome, complete9e-0969.9BLASTN svgBLASTP svg
NC_014532:17139871713987173773623750Halomonas elongata DSM 2581, complete genome9e-0969.9BLASTN svgBLASTP svg
NC_012912:2553391*2553391257454821158Dickeya zeae Ech1591, complete genome1e-0765.9BLASTN svgBLASTP svg
NC_012660:21433762143376220316659791Pseudomonas fluorescens SBW25 chromosome, complete genome1e-0765.9BLASTN svgBLASTP svg
NC_015410:30034173003417302693723521Pseudomonas mendocina NK-01 chromosome, complete genome2e-0661.9BLASTN svgBLASTP svg