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Query: NC_004578:4708220 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 4708220, End: 4731521, Length: 23302

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.

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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_004578:39211993921199394421523017Pseudomonas syringae pv. tomato str. DC3000, complete genome9e-105389BLASTN svgBLASTP svg
NC_011770:3735162*3735162376383628675Pseudomonas aeruginosa LESB58, complete genome9e-99369BLASTN svgBLASTP svg
NC_008463:3503576*3503576352773524160Pseudomonas aeruginosa UCBPP-PA14, complete genome3e-98367BLASTN svgBLASTP svg
NC_005773:1851116*1851116187559924484Pseudomonas syringae pv. phaseolicola 1448A, complete genome3e-46194BLASTN svgBLASTP svg
NC_012660:21433762143376220316659791Pseudomonas fluorescens SBW25 chromosome, complete genome5e-20107BLASTN svgBLASTP svg
NC_005773:1333863*1333863135559921737Pseudomonas syringae pv. phaseolicola 1448A, complete genome2e-19105BLASTN svgBLASTP svg
NC_011901:62571262571266531339602Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, complete2e-19105BLASTN svgBLASTP svg
NC_004578:52691945269194529610426911Pseudomonas syringae pv. tomato str. DC3000, complete genome1e-1799.6BLASTN svgBLASTP svg
NC_007974:10078341007834103035922526Ralstonia metallidurans CH34 chromosome 2, complete sequence3e-1591.7BLASTN svgBLASTP svg
NC_004578:59167115916711594513828428Pseudomonas syringae pv. tomato str. DC3000, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_013421:4714478*4714478478002665549Pectobacterium wasabiae WPP163, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_015733:3736104*37361043837697101594Pseudomonas putida S16 chromosome, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_013946:30536430536432918623823Meiothermus ruber DSM 1279 chromosome, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_004578:49400004940000496327423275Pseudomonas syringae pv. tomato str. DC3000, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_018868:29355802935580295799622417Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_020409:1407857*1407857144945841602Desulfovibrio piezophilus str. nov C1TLV30 chromosome, complete2e-0765.9BLASTN svgBLASTP svg
NC_004578:56237835623783565173727955Pseudomonas syringae pv. tomato str. DC3000, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_019892:1113114*1113114113750824395Singulisphaera acidiphila DSM 18658 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_014931:62038726203872625051746646Variovorax paradoxus EPS chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_012912:44281114428111445683228722Dickeya zeae Ech1591, complete genome3e-0661.9BLASTN svgBLASTP svg