Pre_GI: BLASTP Hits

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Query: NC_004578:5192110:5215805 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 5215805, End: 5216128, Length: 324

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013851:859396:860898860898861227330Allochromatium vinosum DSM 180 chromosome, complete genomeprotein of unknown function DUF1901e-1685.1
NC_015320:1342105:135633113563311356663333Archaeoglobus veneficus SNP6 chromosome, complete genomehypothetical protein1e-0651.6
NC_009074:2970435:297224129722412972597357Burkholderia pseudomallei 668 chromosome I, complete sequencehypothetical protein5e-1166.6
NC_014972:1923035:192459719245971924914318Desulfobulbus propionicus DSM 2032 chromosome, complete genomehypothetical protein1e-24111
NC_011883:1314624:132638313263831326709327Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774,hypothetical protein5e-2096.3
NC_011146:2916223:292723629272362927553318Geobacter bemidjiensis Bem, complete genomehypothetical protein3e-21100
NC_014733:2851984:778077808091312Methylovorus sp. MP688 chromosome, complete genomehypothetical protein5e-25112
NC_012660:2045398:207958820795882079911324Pseudomonas fluorescens SBW25 chromosome, complete genomehypothetical protein1e-1995.1
NC_012660:2045398:208195220819522082275324Pseudomonas fluorescens SBW25 chromosome, complete genomehypothetical protein1e-54211
NC_017986:331610:343812343812344141330Pseudomonas putida ND6 chromosome, complete genomehypothetical protein1e-51201
NC_007005:1636875:167525016752501675573324Pseudomonas syringae pv. syringae B728a, complete genomehypothetical protein5e-57219
NC_007005:1636875:167288916728891673212324Pseudomonas syringae pv. syringae B728a, complete genomehypothetical protein5e-1992.8
NC_004578:5192110:521344452134445213767324Pseudomonas syringae pv. tomato str. DC3000, complete genomehypothetical protein5e-1992.8
NC_013894:1194458:121291812129181213235318Thermocrinis albus DSM 14484 chromosome, complete genomeprotein of unknown function DUF1901e-0652
NC_019902:2943719:294688229468822947217336Thioalkalivibrio nitratireducens DSM 14787, complete genomeprotein of unknown function DUF1903e-0753.9
NC_005090:1082213:109608110960811096386306Wolinella succinogenes DSM 1740, complete genomehypothetical protein8e-1992.4