Pre_GI: BLASTP Hits

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Query: NC_004578:4869673:4880833 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 4880833, End: 4881072, Length: 240

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015379:908904:964303964303964644342Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,Putative transposase, IS66 family2e-23107
NC_015379:2575000:259716425971642597505342Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,Putative transposase, IS66 family2e-23107
NC_016830:952342:964653964653964985333Pseudomonas fluorescens F113 chromosome, complete genometransposase is3 is911 family protein5e-2199.8
NC_016830:5994494:601302060130206013352333Pseudomonas fluorescens F113 chromosome, complete genometransposase is3 is911 family protein5e-2199.8
NC_016830:2642881:264842826484282648760333Pseudomonas fluorescens F113 chromosome, complete genometransposase is3 is911 family protein5e-2199.8
NC_015379:4630367:464368946436894644021333Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,Putative transposase, IS66 family1e-2098.6
NC_016830:3869572:392236539223653922730366Pseudomonas fluorescens F113 chromosome, complete genometransposase is3 is911 family protein3e-2097.4
NC_020209:1949500:196102319610231961355333Pseudomonas poae RE*1-1-14, complete genomehypothetical protein2e-1994
NC_009649:16907:427744277443037264Klebsiella pneumoniae subsp. pneumoniae MGH 78578 plasmid pKPN3,hypothetical protein1e-1685.1
NC_020260:882307:911330911330911593264Cronobacter sakazakii Sp291, complete genomehypothetical protein1e-1685.1
NC_004578:6334735:635962463596246359956333Pseudomonas syringae pv. tomato str. DC3000, complete genomehypothetical protein2e-1581.3
NC_012660:5793200:582548558254855825802318Pseudomonas fluorescens SBW25 chromosome, complete genomeputative transposase8e-1372.4
NC_020209:397376:429924429924430241318Pseudomonas poae RE*1-1-14, complete genomeISPpu14, transposase Orf18e-1269.3
NC_012660:2045398:205981820598182060150333Pseudomonas fluorescens SBW25 chromosome, complete genomeputative transposase1e-1168.6
NC_008463:5246954:530117353011735301439267Pseudomonas aeruginosa UCBPP-PA14, complete genomeputative transposase5e-1166.2
NC_008782:2568027:261179026117902612242453Acidovorax sp. JS42, complete genometransposase IS3/IS911 family protein6e-1166.2
NC_017986:2548720:256416525641652564485321Pseudomonas putida ND6 chromosome, complete genomeISPpu14, transposase Orf19e-1165.9
NC_017986:4885979:490101949010194901339321Pseudomonas putida ND6 chromosome, complete genomeISPpu14, transposase Orf19e-1165.9
NC_002947:4994335:503324350332435033563321Pseudomonas putida KT2440, complete genomeISPpu14, transposase Orf18e-1165.9
NC_002947:4484824:448639544863954486715321Pseudomonas putida KT2440, complete genomeISPpu14, transposase Orf18e-1165.9
NC_010501:30000:422444224442564321Pseudomonas putida W619, complete genometransposase IS3/IS911 family protein8e-1165.9
NC_002947:4994335:503619150361915036511321Pseudomonas putida KT2440, complete genomeISPpu14, transposase Orf11e-1065.5
NC_002947:6152500:615486061548606155180321Pseudomonas putida KT2440, complete genomeISPpu14, transposase Orf11e-1065.5
NC_017986:409899:418958418958419278321Pseudomonas putida ND6 chromosome, complete genomeISPpu14, transposase Orf14e-1063.5
NC_007005:830467:849022849022849339318Pseudomonas syringae pv. syringae B728a, complete genome6e-1062.8
NC_007908:1252189:125737812573781257782405Rhodoferax ferrireducens T118, complete genometransposase IS3/IS9114e-0856.6
NC_007908:3363902:338422333842233384627405Rhodoferax ferrireducens T118, complete genometransposase IS3/IS9114e-0856.6
NC_011992:1234610:125100112510011251339339Acidovorax ebreus TPSY, complete genometransposase IS3/IS911 family protein4e-0856.6
NC_014910:1591003:159744815974481597876429Alicycliphilus denitrificans BC chromosome, complete genometransposase is3/is911 family protein2e-0754.7
NC_015422:2858228:291509529150952915523429Alicycliphilus denitrificans K601 chromosome, complete genometransposase IS3/IS911 family protein2e-0754.7
NC_014910:1912552:192794719279471928375429Alicycliphilus denitrificans BC chromosome, complete genometransposase is3/is911 family protein2e-0754.7
NC_015422:3184823:319825931982593198687429Alicycliphilus denitrificans K601 chromosome, complete genometransposase IS3/IS911 family protein2e-0754.7
NC_009524:1796000:180997918099791810386408Psychrobacter sp. PRwf-1 chromosome, complete genometransposase IS3/IS911 family protein4e-0753.5
NC_015572:1252000:125556412555641255971408Methylomonas methanica MC09 chromosome, complete genometransposase IS3/IS911 family protein5e-0753.1
NC_012792:707864:711230711230711577348Variovorax paradoxus S110 chromosome 2, complete genometransposase IS3/IS911 family protein7e-0752.8
NC_010676:2869936:287185728718572872336480Burkholderia phytofirmans PsJN chromosome 2, complete sequencetransposase IS3/IS911 family protein6e-0752.8
NC_007952:1293024:130614713061471306533387Burkholderia xenovorans LB400 chromosome 2, complete sequencehypothetical protein8e-0752.4
NC_007951:2233676:224135922413592241745387Burkholderia xenovorans LB400 chromosome 1, complete sequencehypothetical protein8e-0752.4
NC_010660:33109:376623766238081420Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequenceIS66 family element, orf11e-0651.6
NC_008752:725189:767892767892768236345Acidovorax avenae subsp. citrulli AAC00-1, complete genometransposase IS3/IS911 family protein5e-0650.1