Pre_GI: BLASTP Hits

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Query: NC_004578:4869673:4878641 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 4878641, End: 4879582, Length: 942

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012912:4167429:4183041418304141842041164Dickeya zeae Ech1591, complete genomehypothetical protein3e-96351
NC_010125:955863:9773909773909786611272Gluconacetobacter diazotrophicus PAl 5, complete genomehypothetical protein3e-47189
NC_008786:3845988:3857369385736938586491281Verminephrobacter eiseniae EF01-2, complete genomehypothetical protein6e-43174
NC_010623:2057467:2073787207378720750281242Burkholderia phymatum STM815 chromosome 2, complete sequencehypothetical protein5e-42171
NC_010999:1381497:139123113912311392163933Lactobacillus casei, complete genomePutative uncharacterized protein FNV21922e-30133
NC_013171:342714:3964053964053976611257Anaerococcus prevotii DSM 20548, complete genomehypothetical protein3e-30132
NC_015635:4097711:4121747412174741230751329Microlunatus phosphovorus NM-1, complete genomehypothetical protein5e-1995.1
NC_015573:569625:5994965994966010431548Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomehypothetical protein6e-1788.2
NC_007005:98488:1082111082111094521242Pseudomonas syringae pv. syringae B728a, complete genomehypothetical protein8e-1787.8
NC_010729:1014957:1031507103150710327151209Porphyromonas gingivalis ATCC 33277, complete genomehypothetical protein9e-1787.8
NC_009050:212270:2387132387132400411329Rhodobacter sphaeroides ATCC 17029 chromosome 2, complete sequencehypothetical protein1e-1687.4
NC_020409:2222000:2231255223125522324871233Desulfovibrio piezophilus str. nov C1TLV30 chromosome, completehypothetical protein1e-1687.4
NC_013037:5395951:5405570540557054067751206Dyadobacter fermentans DSM 18053, complete genomehypothetical protein9e-1684.7
NC_009720:5046861:5056659505665950580501392Xanthobacter autotrophicus Py2, complete genomehypothetical protein1e-1584
NC_015160:2145915:2157954215795421591201167Odoribacter splanchnicus DSM 20712 chromosome, complete genomehypothetical protein4e-1582.4
NC_013421:478586:4869794869794881571179Pectobacterium wasabiae WPP163, complete genomehypothetical protein6e-1581.6
NC_015177:1950461:1952587195258719539241338Pedobacter saltans DSM 12145 chromosome, complete genomehypothetical protein1e-1273.9
NC_011071:1877500:1886682188668218878691188Stenotrophomonas maltophilia R551-3, complete genomehypothetical protein2e-1273.9
NC_009719:1135523:1144595114459511459741380Parvibaculum lavamentivorans DS-1 chromosome, complete genomehypothetical protein2e-1273.6
NC_009708:4182460:4193378419337841946161239Yersinia pseudotuberculosis IP 31758 chromosome, complete genomehypothetical protein2e-1273.2
NC_008639:1462000:1470090147009014713701281Chlorobium phaeobacteroides DSM 266, complete genomehypothetical protein6e-1272
NC_003919:2824000:2842906284290628443001395Xanthomonas axonopodis pv. citri str. 306, complete genomehypothetical protein1e-1170.9
NC_006513:1379735:1446732144673214481201389Azoarcus sp. EbN1, complete genomehypothetical protein3e-1169.3
NC_018867:993903:1003059100305910043571299Dehalobacter sp. CF chromosome, complete genomehypothetical protein1e-1067.4
NC_018866:925704:9384389384389397361299Dehalobacter sp. DCA chromosome, complete genomehypothetical protein1e-1067.4
NC_012660:165559:1891781891781904041227Pseudomonas fluorescens SBW25 chromosome, complete genomehypothetical protein1e-1067
NC_015138:4205986:4218072421807242193071236Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completehypothetical protein3e-1066.2
NC_004547:1837500:1853836185383618548791044Erwinia carotovora subsp. atroseptica SCRI1043, complete genomehypothetical protein5e-1065.5
NC_016616:915755:9248609248609261161257Dechlorosoma suillum PS chromosome, complete genomehypothetical protein6e-1065.1
NC_020541:2769419:2787228278722827885411314Rhodanobacter sp. 2APBS1, complete genomehypothetical protein7e-1065.1
NC_020829:2152000:2159955215995521610191065Pseudomonas denitrificans ATCC 13867, complete genomehypothetical protein8e-1064.7
NC_011080:2870428:2879530287953028806451116Salmonella enterica subsp. enterica serovar Newport str. SL254,hypothetical protein2e-0963.5
NC_012917:3684840:3693835369383536949501116Pectobacterium carotovorum subsp. carotovorum PC1, complete genomehypothetical protein3e-0963.2
NC_012225:1497934:1510698151069815117351038Brachyspira hyodysenteriae WA1, complete genomehypothetical protein2e-0860.5
NC_014209:761832:7630377630377645121476Thermoanaerobacter mathranii subsp. mathranii str. A3 chromosome,hypothetical protein2e-0860.1
NC_008577:2402165:2427014242701424281471134Shewanella sp. ANA-3 chromosome 1, complete sequencehypothetical protein2e-0860.1
NC_009659:1:6002600271921191Janthinobacterium sp. Marseille chromosome, complete genomehypothetical protein5e-0858.9
NC_013061:2077603:2088604208860420896831080Pedobacter heparinus DSM 2366, complete genomehypothetical protein5e-0858.5
NC_014011:962474:9724729724729736711200Aminobacterium colombiense DSM 12261 chromosome, complete genomehypothetical protein1e-0757.8
NC_012997:817553:8295858295858307571173Teredinibacter turnerae T7901, complete genomehypothetical protein2e-0653.5
NC_020304:3029243:3039359303935930405311173Desulfocapsa sulfexigens DSM 10523, complete genomehypothetical protein8e-0651.6