Pre_GI: BLASTN Hits

Some Help

Query: NC_004463:1369165 Bradyrhizobium japonicum USDA 110, complete genome

Start: 1369165, End: 1395134, Length: 25970

Host Lineage: Bradyrhizobium diazoefficiens; Bradyrhizobium; Bradyrhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This strain was isolated from Glycine hispida in 1959 in Florida, USA, and has been widely studied because of its superior symbiotic nitrogen fixation with soybeans as compared to other strains. This strain contains a 681 Kb symbiosis island that contains genes for nitrogen fixation and root nodule formation. The chromosome also contains genes resembling those of type III and IV secretion systems.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_009053:1942973*1942973197934536373Actinobacillus pleuropneumoniae L20, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_010939:1986263*1986263202856742305Actinobacillus pleuropneumoniae serovar 7 str. AP76, complete1e-0869.9BLASTN svgBLASTP svg
NC_020453:896458*89645891917822721Agromonas oligotrophica S58 DNA, complete genome0878BLASTN svgBLASTP svg
NC_009922:2590317*2590317261009919783Alkaliphilus oremlandii OhILAs, complete genome6e-1797.6BLASTN svgBLASTP svg
NC_013171:228356*22835625488926534Anaerococcus prevotii DSM 20548, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_011891:17940*179404071722778Anaeromyxobacter dehalogenans 2CP-1, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_013858:416000*41600045309937100Azospirillum sp. B510 plasmid pAB510d, complete sequence6e-1797.6BLASTN svgBLASTP svg
NC_008783:222000*22200026359941600Bartonella bacilliformis KC583, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_002927:383760*38376040679123032Bordetella bronchiseptica RB50, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_010170:4800000*48000004908823108824Bordetella petrii, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_004463:1520303*1520303154802027718Bradyrhizobium japonicum USDA 110, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_006932:266000*26600029059924600Brucella abortus biovar 1 str. 9-941 chromosome I, complete2e-1695.6BLASTN svgBLASTP svg
NC_010742:264433*26443328809923667Brucella abortus S19 chromosome 1, complete sequence2e-1695.6BLASTN svgBLASTP svg
NC_003317:1719546*1719546174739327848Brucella melitensis 16M chromosome I, complete sequence2e-1695.6BLASTN svgBLASTP svg
NC_007618:262415*26241528630723893Brucella melitensis biovar Abortus 2308 chromosome I, complete2e-1695.6BLASTN svgBLASTP svg
NC_015857:265721*26572128968623966Brucella pinnipedialis B2/94 chromosome chromosome 1, complete2e-1695.6BLASTN svgBLASTP svg
NC_010169:261473*26147328238720915Brucella suis ATCC 23445 chromosome I, complete sequence2e-1695.6BLASTN svgBLASTP svg
NC_014721:2012751*2012751203422421474Caldicellulosiruptor kristjanssonii 177R1B chromosome, complete5e-1177.8BLASTN svgBLASTP svg
NC_014758:1387470*1387470141004622577Calditerrivibrio nitroreducens DSM 19672 chromosome, complete1e-1489.7BLASTN svgBLASTP svg
NC_009089:117980*11798016311645137Clostridium difficile 630, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_009089:1*13459934599Clostridium difficile 630, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_013316:1*14895548955Clostridium difficile R20291, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_015275:1*12311023110Clostridium lentocellum DSM 5427 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_014376:6296*62963008623791Clostridium saccharolyticum WM1 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_014376:4369666*4369666439393824273Clostridium saccharolyticum WM1 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_014614:554949*55494957879923851Clostridium sticklandii, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_014614:2500301*2500301252659926299Clostridium sticklandii, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_020302:858218582114074254922Corynebacterium halotolerans YIM 70093 = DSM 44683, complete2e-0765.9BLASTN svgBLASTP svg
NC_015185:1114180*1114180113825624077Desulfurobacterium thermolithotrophum DSM 11699 chromosome,8e-1073.8BLASTN svgBLASTP svg
NC_009952:997950*997950102059922650Dinoroseobacter shibae DFL 12, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_010376:606000*60600062469418695Finegoldia magna ATCC 29328, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_003454:63500*6350010726843769Fusobacterium nucleatum subsp. nucleatum ATCC 25586, complete6e-1797.6BLASTN svgBLASTP svg
NC_003454:249304*24930426978820485Fusobacterium nucleatum subsp. nucleatum ATCC 25586, complete6e-1797.6BLASTN svgBLASTP svg
NC_010814:3332088*3332088335178319696Geobacter lovleyi SZ, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_007645:1336227*1336227136476028534Hahella chejuensis KCTC 2396, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_008789:1237969*1237969126209924131Halorhodospira halophila SL1, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_014323:4792048*4792048483609944052Herbaspirillum seropedicae SmR1 chromosome, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_014830:33874793387479343444046962Intrasporangium calvum DSM 43043 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_009664:4423829*44238294686013262185Kineococcus radiotolerans SRS30216, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_012559:2663747*2663747271401150265Laribacter hongkongensis HLHK9, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_007626:35222653522265361842896164Magnetospirillum magneticum AMB-1, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_019973:2417000*2417000243959922600Mesorhizobium australicum WSM2073, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_014923:2439197*2439197246272623530Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, complete2e-1385.7BLASTN svgBLASTP svg
NC_015675:2567000*2567000258988822889Mesorhizobium opportunistum WSM2075 chromosome, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_008254:102465*10246512336020896Mesorhizobium sp. BNC1, complete genome2e-19105BLASTN svgBLASTP svg
NC_011894:33198563319856336109941244Methylobacterium nodulans ORS 2060, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_011894:30299643029964307745447491Methylobacterium nodulans ORS 2060, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_015222:1905194*1905194192907923886Nitrosomonas sp. AL212 chromosome, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_020911:2921925*2921925299019968275Octadecabacter antarcticus 307, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_020911:30469163046916306823221317Octadecabacter antarcticus 307, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_008686:1960034*1960034199164331610Paracoccus denitrificans PD1222 chromosome 1, complete sequence2e-1075.8BLASTN svgBLASTP svg
NC_007948:4646344*4646344469438848045Polaromonas sp. JS666, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_009439:4661102*4661102468191020809Pseudomonas mendocina ymp, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_015458:2614108*2614108264388729780Pusillimonas sp. T7-7 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_015677:3787419*3787419381339525977Ramlibacter tataouinensis TTB310 chromosome, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_015437:2164997*2164997218559920603Selenomonas sputigena ATCC 35185 chromosome, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_015593:2553500*2553500259301139512Sphingobium chlorophenolicum L-1 chromosome chromosome 1, complete4e-21111BLASTN svgBLASTP svg
NC_015976:20235402023540205359930060Sphingobium sp. SYK-6, complete genome4e-21111BLASTN svgBLASTP svg
NC_006177:280234*28023431920738974Symbiobacterium thermophilum IAM 14863, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_006177:12383*123833284720465Symbiobacterium thermophilum IAM 14863, complete genome8e-1383.8BLASTN svgBLASTP svg
NC_008319:478499*47849951832339825Synechococcus sp. CC9311, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_007516:413159*41315944618333025Synechococcus sp. CC9605, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_014964:388458*38845844542856971Thermoanaerobacter brockii subsp. finnii Ako-1 chromosome, complete3e-0661.9BLASTN svgBLASTP svg
NC_013921:1977444*1977444203224454801Thermoanaerobacter italicus Ab9 chromosome, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_014209:1910109*1910109194573835630Thermoanaerobacter mathranii subsp. mathranii str. A3 chromosome,1e-0869.9BLASTN svgBLASTP svg
NC_014538:1975385*1975385199467019286Thermoanaerobacter sp. X513 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_003869:2143892*2143892219937255481Thermoanaerobacter tengcongensis MB4, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_015958:2251619*2251619232072969111Thermoanaerobacter wiegelii Rt8.B1 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_014410:403776*40377646022156446Thermoanaerobacterium thermosaccharolyticum DSM 571 chromosome,3e-0661.9BLASTN svgBLASTP svg
NC_019970:336472*33647241533078859Thermoanaerobacterium thermosaccharolyticum M0795, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_015555:327562*32756238328255721Thermoanaerobacterium xylanolyticum LX-11 chromosome, complete3e-0661.9BLASTN svgBLASTP svg
NC_015499:119200*11920016551846319Thermodesulfobium narugense DSM 14796 chromosome, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_014926:295988*29598832694930962Thermovibrio ammonificans HB-1 chromosome, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_013889:2603914*2603914262824624333Thioalkalivibrio sp. K90mix chromosome, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_011901:3072817*3072817309809925283Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, complete2e-1385.7BLASTN svgBLASTP svg
NC_019940:2236630*2236630225811121482Thioflavicoccus mobilis 8321 chromosome, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_014221:2392150*2392150241624224093Truepera radiovictrix DSM 17093 chromosome, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_014931:724102*72410275590331802Variovorax paradoxus EPS chromosome, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_012791:651480*65148067159920120Variovorax paradoxus S110 chromosome 1, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_005090:1921154*1921154194243121278Wolinella succinogenes DSM 1740, complete genome2e-1075.8BLASTN svgBLASTP svg