Pre_GI: BLASTP Hits

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Query: NC_004463:5540924:5557859 Bradyrhizobium japonicum USDA 110, complete genome

Start: 5557859, End: 5559160, Length: 1302

Host Lineage: Bradyrhizobium diazoefficiens; Bradyrhizobium; Bradyrhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This strain was isolated from Glycine hispida in 1959 in Florida, USA, and has been widely studied because of its superior symbiotic nitrogen fixation with soybeans as compared to other strains. This strain contains a 681 Kb symbiosis island that contains genes for nitrogen fixation and root nodule formation. The chromosome also contains genes resembling those of type III and IV secretion systems.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009439:608500:6145236145236157701248Pseudomonas mendocina ymp, complete genomerestriction modification system DNA specificity subunit6e-46185
NC_015865:229883:2407132407132420051293Thermococcus sp. 4557 chromosome, complete genomerestriction modification system DNA specificity subunit3e-43176
NC_012881:1802000:1822804182280418240061203Desulfovibrio salexigens DSM 2638, complete genomerestriction modification system DNA specificity domain protein1e-39164
NC_008313:1:94609460107281269Ralstonia eutropha H16 chromosome 1, complete sequenceType I restriction-modification system specificity subunit2e-35150
NC_018876:587094:6087896087896100811293Methanolobus psychrophilus R15 chromosome, complete genometype I restriction-modification system, S subunit7e-32138
NC_019896:3311000:3323359332335933246391281Bacillus subtilis subsp. subtilis str. BSP1 chromosome, completerestriction modification system DNA specificity domain-containing protein2e-31137
NC_009033:755226:7610247610247624151392Staphylothermus marinus F1, complete genomerestriction modification system DNA specificity domain2e-31137
NC_002607:81452:8916089160905871428Halobacterium sp. NRC-1, complete genomeRmeS9e-31135
NC_010364:84900:9158891588930151428Halobacterium salinarum R1, complete genometype I site-specific deoxyribonuclease subunit rmeS9e-31135
NC_010003:1126800:1142463114246311437521290Petrotoga mobilis SJ95, complete genomerestriction modification system DNA specificity domain9e-31134
NC_012108:2194251:2194251219425121955311281Desulfobacterium autotrophicum HRM2, complete genomeHsdS23e-30133
NC_016047:2480921:2491021249102124922981278Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completetype I restriction-modification enzyme, S subunit3e-28126
NC_015587:90539:9754297542988611320Hydrogenobaculum sp. SHO chromosome, complete genomerestriction modification system DNA specificity domain protein6e-27122
NC_020411:90538:9754197541988601320Hydrogenobaculum sp. HO, complete genomerestriction modification system DNA specificity domain containing protein6e-27122
NC_015557:90503:9750697506988251320Hydrogenobaculum sp. 3684 chromosome, complete genomerestriction modification system DNA specificity domain protein6e-27122
NC_008346:2579756:2600348260034826015891242Syntrophomonas wolfei subsp. wolfei str. Goettingen, completeRestriction endonuclease S subunits-like protein4e-27122
NC_017161:1:1655416554178341281Hydrogenobacter thermophilus TK-6 chromosome, complete genomerestriction modification system DNA specificity domain-containing protein5e-25115
NC_013799:1:1649316493177731281Hydrogenobacter thermophilus TK-6, complete genomerestriction endonuclease S subunit5e-25115
NC_016620:781995:7957407957407969781239Bacteriovorax marinus SJ, complete genomeputative type I restriction enzyme specificity protein5e-24112
NC_009076:75535:915959159592542948Burkholderia pseudomallei 1106a chromosome I, complete sequenceRestriction endonuclease S subunits6e-24112
NC_016002:1048420:1074827107482710761731347Pseudogulbenkiania sp. NH8B, complete genometype I restriction-modification system specificity subunit2e-23110
NC_014253:431942:4581784581784595631386Methanohalobium evestigatum Z-7303 chromosome, complete genomerestriction modification system DNA specificity domain-containing protein2e-23110
NC_013720:1382561:1397756139775613990211266Pirellula staleyi DSM 6068, complete genomerestriction modification system DNA specificity domain protein5e-21102
NC_014206:411143:4175314175314187451215Geobacillus sp. C56-T3 chromosome, complete genomerestriction modification system DNA specificity domain-containing protein1e-20101
NC_018876:2151226:2161350216135021625671218Methanolobus psychrophilus R15 chromosome, complete genomerestriction modification system DNA specificity domain-containing protein2e-20100
NC_015416:621513:6339436339436351991257Methanosaeta concilii GP-6 chromosome, complete genometype I restriction-modification enzyme, S subunit4e-2099.8
NC_009925:647752:6642866642866654341149Acaryochloris marina MBIC11017, complete genometype I restriction-modification enzyme S subunit2e-1997.4
NC_018012:598724:6157906157906170821293Thiocystis violascens DSM 198 chromosome, complete genomerestriction endonuclease S subunit2e-1997.1
NC_006510:372826:3786463786463796861041Geobacillus kaustophilus HTA426, complete genometype I restriction-modification system S subunit2e-1997.1
NC_016803:2431672:2450504245050424517211218Desulfovibrio desulfuricans ND132 chromosome, complete genomerestriction modification system DNA specificity domain-containing protein2e-1997.1
NC_006672:47610:6642766427676351209Gluconobacter oxydans 621H plasmid pGOX1, complete sequenceType I restriction-modification enzyme S subunit3e-1893.2
NC_003272:3275413:3277624327762432789071284Nostoc sp. PCC 7120, complete genometype I restriction-modification enzyme S subunit1e-1791.7
NC_007575:973559:9842349842349854961263Sulfurimonas denitrificans DSM 1251, complete genomerestriction modification system DNA specificity subunit2e-1790.9
NC_015320:1690047:1699124169912417003861263Archaeoglobus veneficus SNP6 chromosome, complete genomerestriction modification system DNA specificity domain-containing protein2e-1790.5
NC_017378:1518529:1518529151852915196801152Helicobacter pylori Puno120 chromosome, complete genomerestriction modification system DNA specificity subunit7e-1789
NC_005363:3562205:3576704357670435779571254Bdellovibrio bacteriovorus HD100, complete genometype I restriction-modification system, S subunit1e-1687.8
NC_009715:1470419:1483709148370914852951587Campylobacter curvus 525.92 chromosome, complete genomeputative type I restriction-modification system, S subunit7e-1685.5
NC_015703:3880903:3901289390128939026681380Runella slithyformis DSM 19594 chromosome, complete genomerestriction modification system DNA specificity domain-containing protein1e-1584.7
NC_015677:1282865:1291978129197812937441767Ramlibacter tataouinensis TTB310 chromosome, complete genometype I restriction- modification, DNA specificity subunit1e-1584.7
NC_013440:3813132:3832106383210638333771272Haliangium ochraceum DSM 14365, complete genomerestriction modification system DNA specificity domain protein4e-1582.8
NC_019771:3237000:3256940325694032582681329Anabaena cylindrica PCC 7122, complete genomerestriction modification system DNA specificity domain protein4e-1582.8
NC_007948:1972290:2002112200211220034671356Polaromonas sp. JS666, complete genomeRestriction endonuclease S subunits-like9e-1582
NC_008541:1042322:1066991106699110681631173Arthrobacter sp. FB24 chromosome 1, complete sequencerestriction modification system DNA specificity domain1e-1481.6
NC_016051:1005188:1012531101253110138171287Thermococcus sp. AM4 chromosome, complete genomeType I restriction-modification system specificity subunit S2e-1480.9
NC_010645:558974:5689445689445701641221Bordetella avium 197N, complete genometype i restriction enzyme EcoR124II specificity protein2e-1480.5
NC_002953:15416:3758837588388981311Staphylococcus aureus subsp. aureus MSSA476, complete genomeputative type I restriction enzyme specificity protein5e-1479.3
NC_016887:3286436:3326449332644933275851137Nocardia cyriacigeorgica GUH-2, complete genomeType I restriction-modification enzyme S subunit, specificity-determinant6e-1479
NC_016026:1224129:1234454123445412357431290Micavibrio aeruginosavorus ARL-13 chromosome, complete genometype I restriction modification DNA specificity domain-containing protein6e-1479
NC_016593:416661:4224874224874236651179Geobacillus thermoleovorans CCB_US3_UF5 chromosome, completehypothetical protein1e-1378.2
NC_014363:1902868:1912983191298319145601578Olsenella uli DSM 7084 chromosome, complete genomerestriction modification system DNA specificity domain protein1e-1377.8
NC_017187:814940:8241198241198254171299Arcobacter butzleri ED-1, complete genomerestriction-modification system DNA specificity subunit2e-1377.8
NC_013592:446092:4545344545344557241191Dickeya dadantii Ech586, complete genomerestriction modification system DNA specificity domain protein2e-1377.8
NC_020209:4768500:4777702477770247788471146Pseudomonas poae RE*1-1-14, complete genomerestriction modification system DNA specificity subunit5e-1375.9
NC_015562:755785:7636407636407649591320Methanotorris igneus Kol 5 chromosome, complete genomerestriction modification system DNA specificity domain-containing protein7e-1375.5
NC_011726:3051408:307105630710563071772717Cyanothece sp. PCC 8801, complete genomerestriction modification system DNA specificity domain protein8e-1375.1
NC_009925:2240871:2242037224203722437581722Acaryochloris marina MBIC11017, complete genometype I restriction-modification system S subunit1e-1274.7
NC_007777:4796627:4796627479662747979371311Frankia sp. CcI3, complete genomerestriction modification system DNA specificity domain1e-1274.7
NC_008786:3915000:392474739247473925637891Verminephrobacter eiseniae EF01-2, complete genomerestriction modification system DNA specificity domain4e-1272.8
NC_014618:690056:7105557105557117391185Enterobacter cloacae SCF1 chromosome, complete genomerestriction modification system DNA specificity domain-containing protein7e-1272.4
NC_007677:1354500:1382294138229413835201227Salinibacter ruber DSM 13855, complete genometype I restriction-modification system, S subunit, putative7e-1272.4
NC_013235:5127148:5143727514372751449621236Nakamurella multipartita DSM 44233, complete genomeRestriction endonuclease S subunits-like protein2e-1170.9
NC_015563:4911188:4921644492164449229751332Delftia sp. Cs1-4 chromosome, complete genomerestriction modification system DNA specificity domain-containing protein2e-1170.5
NC_013161:4093322:4102957410295741043271371Cyanothece sp. PCC 8802, complete genomerestriction modification system DNA specificity domain protein2e-1170.5
NC_007969:2885249:2901693290169329029341242Psychrobacter cryohalolentis K5, complete genomerestriction modification system DNA specificity domain4e-1169.7
NC_015458:2338437:2362859236285923641781320Pusillimonas sp. T7-7 chromosome, complete genomehypothetical protein5e-1169.3
NC_014034:1036652:1048875104887510505001626Rhodobacter capsulatus SB1003 chromosome, complete genometype I restriction-modification system RcaSBIP subunit S5e-1169.3
NC_018604:2579000:2603755260375526049511197Brachyspira pilosicoli WesB complete genometype I restriction-modification enzyme S subunit5e-1169.3
NC_021064:793098:8041978041978054261230Propionibacterium avidum 44067, complete genometype I restriction modification DNA specificity domain protein7e-1168.9
NC_016943:2054688:2067149206714920683541206Blastococcus saxobsidens DD2, complete genomeputative Restriction modification system DNA specificity domain7e-1168.9
NC_018721:943801:9501419501419514091269Psychroflexus torquis ATCC 700755 chromosome, complete genometype I restriction-modification system, specificity subunit HdsS9e-1168.6
NC_010571:1334000:1344968134496813462811314Opitutus terrae PB90-1, complete genomerestriction modification system DNA specificity domain9e-1168.6
NC_016589:183432:2040932040932054061314Burkholderia sp. YI23 chromosome 1, complete sequencerestriction modification system DNA specificity domain-containing protein9e-1168.6
NC_007413:1405817:1418019141801914193831365Anabaena variabilis ATCC 29413, complete genomeRestriction modification system DNA specificity domain1e-1067.8
NC_008340:2034810:2045005204500520462641260Alkalilimnicola ehrlichei MLHE-1, complete genomerestriction modification system DNA specificity domain2e-1067.8
NC_015676:1530000:1544290154429015455401251Methanosalsum zhilinae DSM 4017 chromosome, complete genomerestriction modification system DNA specificity domain-containing protein2e-1067
NC_014762:890914:9015629015629027821221Sulfuricurvum kujiense DSM 16994 chromosome, complete genomerestriction modification system DNA specificity domain4e-1066.2
NC_004369:256262:2803292803292815581230Corynebacterium efficiens YS-314, complete genomeputative restriction enzyme subunit S4e-1066.2
NC_012669:1700626:1710630171063017119131284Beutenbergia cavernae DSM 12333, complete genomerestriction modification system DNA specificity domain protein4e-1066.2
NC_013595:8338619:8351286835128683524941209Streptosporangium roseum DSM 43021, complete genomeRestriction endonuclease S subunits-like protein5e-1065.9
NC_014220:1162948:1167996116799611692641269Syntrophothermus lipocalidus DSM 12680 chromosome, complete genomerestriction modification system DNA specificity domain protein6e-1065.9
NC_015216:1102837:1118283111828311194941212Methanobacterium sp. AL-21 chromosome, complete genomerestriction modification system DNA specificity domain-containing protein7e-1065.5
NC_013861:3341955:3344087334408733454871401Legionella longbeachae NSW150, complete genometype I restriction-modification system (methylase_S)9e-1065.1
NC_014216:1197704:1203140120314012045161377Desulfurivibrio alkaliphilus AHT2 chromosome, complete genomerestriction modification system DNA specificity domain protein1e-0964.7
NC_013889:1740858:1753736175373617549951260Thioalkalivibrio sp. K90mix chromosome, complete genomerestriction modification system DNA specificity domain protein1e-0964.3
NC_010163:614634:6229006229006241591260Acholeplasma laidlawii PG-8A chromosome, complete genometype I site-specific restriction-modification system, S (specificity) subunit1e-0964.3
NC_015572:4618467:4638997463899746404661470Methylomonas methanica MC09 chromosome, complete genomerestriction modification system DNA specificity domain-containing protein2e-0963.9
NC_008344:554229:5639575639575652251269Nitrosomonas eutropha C91, complete genomerestriction modification system DNA specificity domain3e-0963.5
NC_013410:1651000:1662625166262516638511227Fibrobacter succinogenes subsp. succinogenes S85 chromosome,restriction modification system DNA specificity domain-containing protein4e-0963.2
NC_014002:1061501:1071126107112610723701245Methanohalophilus mahii DSM 5219 chromosome, complete genomerestriction modification system DNA specificity domain protein4e-0962.8
NC_004578:1190000:1193259119325911945271269Pseudomonas syringae pv. tomato str. DC3000, complete genometype I restriction-modification system, S subunit6e-0962.4
NC_012968:239476:2505692505692517621194Methylotenera mobilis JLW8, complete genomerestriction modification system DNA specificity domain protein6e-0962.4
NC_015222:3137167:3144490314449031457521263Nitrosomonas sp. AL212 chromosome, complete genomerestriction modification system DNA specificity domain6e-0962.4
NC_014974:758129:7645347645347655921059Thermus scotoductus SA-01 chromosome, complete genomerestriction modification system DNA specificity domain-containing protein6e-0962.4
NC_020541:4122852:4135453413545341367511299Rhodanobacter sp. 2APBS1, complete genomerestriction endonuclease S subunit1e-0861.2
NC_011831:2213306:2212048221204822133191272Chloroflexus aggregans DSM 9485, complete genomerestriction modification system DNA specificity domain protein1e-0861.2
NC_013446:1724000:1729654172965417309431290Comamonas testosteroni CNB-2, complete genomehypothetical protein2e-0860.5
NC_003901:2727361:2735284273528427365041221Methanosarcina mazei Go1, complete genometype I restriction-modification system specificity subunit2e-0860.5
NC_014008:1463795:1483479148347914848221344Coraliomargarita akajimensis DSM 45221 chromosome, complete genomerestriction modification system DNA specificity domain protein3e-0860.1
NC_015634:3017564:3034052303405230353621311Bacillus coagulans 2-6 chromosome, complete genomeputative type I restriction modification system, specificity protein4e-0859.7
NC_010994:859500:8739068739068751801275Rhizobium etli CIAT 652, complete genomeprobable type I restriction-modification system protein, specificity subunit1e-0758.5
NC_006270:4149004:4166525416652541676881164Bacillus licheniformis ATCC 14580, complete genomeHsdS1e-0758.5
NC_006322:4149500:4166640416664041678031164Bacillus licheniformis ATCC 14580, complete genomehypothetical protein1e-0758.5
NC_014973:3414459:3431795343179534330301236Geobacter sp. M18 chromosome, complete genomerestriction modification system DNA specificity domain-containing protein1e-0758.2
NC_011901:1860887:1891507189150718927661260Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, completetype I restriction-modification system specificity subunit2e-0757.8
NC_014394:3114648:3132320313232031340411722Gallionella capsiferriformans ES-2 chromosome, complete genomerestriction modification system DNA specificity domain2e-0757.8
NC_011662:1:7271727184071137Thauera sp. MZ1T, complete genomerestriction modification system DNA specificity domain protein3e-0757
NC_009712:1008000:1014213101421310155861374Candidatus Methanoregula boonei 6A8, complete genomerestriction modification system DNA specificity subunit3e-0757
NC_012917:3241196:3252422325242232535941173Pectobacterium carotovorum subsp. carotovorum PC1, complete genomerestriction modification system DNA specificity domain protein3e-0757
NC_014640:6815264:6824393682439368255951203Achromobacter xylosoxidans A8 chromosome, complete genometype I restriction enzyme StySPI specificity protein3e-0756.6
NC_014550:2562053:2590617259061725918701254Arthrobacter arilaitensis Re117, complete genometype I restriction-modification system specificity subunit4e-0756.6
NC_015138:1:1042110421117371317Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completerestriction modification system DNA specificity domain-containing protein4e-0756.2
NC_007760:2611608:2627991262799126292051215Anaeromyxobacter dehalogenans 2CP-C, complete genometype I restriction-modification system specificity subunit4e-0756.2
NC_019904:5308998:531281753128175313734918Echinicola vietnamensis DSM 17526 chromosome, complete genomerestriction endonuclease S subunit6e-0755.8
NC_015161:1556766:1580026158002615813671342Deinococcus proteolyticus MRP chromosome, complete genome8e-0755.5
NC_013411:284461:2934562934562947451290Geobacillus sp. Y412MC61, complete genomerestriction modification system DNA specificity domain protein9e-0755.1
NC_014915:2427000:2444743244474324460321290Geobacillus sp. Y412MC52 chromosome, complete genomerestriction modification system DNA specificity domain protein9e-0755.1
NC_018607:1505908:1518405151840515196521248Brachyspira pilosicoli B2904 chromosome, complete genometype I restriction-modification enzyme S subunit1e-0654.7
NC_010617:558954:5701515701515713471197Kocuria rhizophila DC2201, complete genometype I restriction enzyme S protein1e-0654.7
NC_012483:1813521:1831764183176418330531290Acidobacterium capsulatum ATCC 51196, complete genometype I restriction-modification system, S subunit3e-0653.5