Pre_GI: BLASTN Hits

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Query: NC_004129:5373886 Pseudomonas fluorescens Pf-5, complete genome

Start: 5373886, End: 5452599, Length: 78714

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_008463:52469545246954530671059757Pseudomonas aeruginosa UCBPP-PA14, complete genome01251BLASTN svgBLASTP svg
NC_007005:16368751636875167981442940Pseudomonas syringae pv. syringae B728a, complete genome4e-125458BLASTN svgBLASTP svg
NC_015556:11885001188500122602637527Pseudomonas fulva 12-X chromosome, complete genome6e-112414BLASTN svgBLASTP svg
NC_008463:53135275313527535528941763Pseudomonas aeruginosa UCBPP-PA14, complete genome6e-78301BLASTN svgBLASTP svg
NC_005773:1333863*1333863135559921737Pseudomonas syringae pv. phaseolicola 1448A, complete genome3e-67266BLASTN svgBLASTP svg
NC_004578:93486793486796406929203Pseudomonas syringae pv. tomato str. DC3000, complete genome6e-38168BLASTN svgBLASTP svg
NC_012560:36986973698697372152322827Azotobacter vinelandii DJ, complete genome1e-35161BLASTN svgBLASTP svg
NC_021150:36986963698696372152222827Azotobacter vinelandii CA6, complete genome1e-35161BLASTN svgBLASTP svg
NC_011662:10587941058794107763818845Thauera sp. MZ1T, complete genome2e-34157BLASTN svgBLASTP svg
NC_011662:10417251041725106095019226Thauera sp. MZ1T, complete genome2e-34157BLASTN svgBLASTP svg
NC_021150:36671763667176369462327448Azotobacter vinelandii CA6, complete genome1e-32151BLASTN svgBLASTP svg
NC_012560:36671773667177369462427448Azotobacter vinelandii DJ, complete genome1e-32151BLASTN svgBLASTP svg
NC_015422:18761021876102190372527624Alicycliphilus denitrificans K601 chromosome, complete genome5e-32149BLASTN svgBLASTP svg
NC_006513:1379735*1379735146218482450Azoarcus sp. EbN1, complete genome5e-29139BLASTN svgBLASTP svg
NC_010002:45448184544818456374018923Delftia acidovorans SPH-1, complete genome5e-29139BLASTN svgBLASTP svg
NC_010170:4533416*4533416456674433329Bordetella petrii, complete genome5e-29139BLASTN svgBLASTP svg
NC_009138:1974935*1974935203606461130Herminiimonas arsenicoxydans, complete genome2e-28137BLASTN svgBLASTP svg
NC_008825:2525380*2525380255303327654Methylibium petroleiphilum PM1, complete genome3e-27133BLASTN svgBLASTP svg
NC_011901:29835552983555300209918545Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, complete2e-25127BLASTN svgBLASTP svg
NC_008782:14831551483155150744824294Acidovorax sp. JS42, complete genome1e-23121BLASTN svgBLASTP svg
NC_007275:112112521125Pseudomonas syringae pv. phaseolicola 1448A small plasmid, complete5e-23119BLASTN svgBLASTP svg
NC_008782:2326439*2326439236857442136Acidovorax sp. JS42, complete genome2e-22117BLASTN svgBLASTP svg
NC_010688:2781624*2781624283409952476Xanthomonas campestris pv. campestris, complete genome7e-22115BLASTN svgBLASTP svg
NC_005773:866157*86615792659960443Pseudomonas syringae pv. phaseolicola 1448A, complete genome1e-20111BLASTN svgBLASTP svg
NC_003919:26390802639080265929020211Xanthomonas axonopodis pv. citri str. 306, complete genome7e-19105BLASTN svgBLASTP svg
NC_008752:29369332936933297832941397Acidovorax avenae subsp. citrulli AAC00-1, complete genome3e-18103BLASTN svgBLASTP svg
NC_007005:17054061705406172883623431Pseudomonas syringae pv. syringae B728a, complete genome4e-1799.6BLASTN svgBLASTP svg
NC_012912:48339048339052576442375Dickeya zeae Ech1591, complete genome2e-1697.6BLASTN svgBLASTP svg
NC_007005:830467*83046785407423608Pseudomonas syringae pv. syringae B728a, complete genome2e-1697.6BLASTN svgBLASTP svg
NC_004129:5481629*5481629550572324095Pseudomonas fluorescens Pf-5, complete genome2e-1697.6BLASTN svgBLASTP svg
NC_004578:895019*89501992169226674Pseudomonas syringae pv. tomato str. DC3000, complete genome7e-1695.6BLASTN svgBLASTP svg
NC_011662:10179331017933104515827226Thauera sp. MZ1T, complete genome7e-1695.6BLASTN svgBLASTP svg
NC_013421:17807221780722180552624805Pectobacterium wasabiae WPP163, complete genome1e-1491.7BLASTN svgBLASTP svg
NC_010170:1498253*1498253154638148129Bordetella petrii, complete genome1e-1491.7BLASTN svgBLASTP svg
NC_009512:32825003282500331588733388Pseudomonas putida F1, complete genome1e-1491.7BLASTN svgBLASTP svg
NC_008752:58588458588461104025157Acidovorax avenae subsp. citrulli AAC00-1, complete genome1e-1491.7BLASTN svgBLASTP svg
NC_004578:4465247*4465247448346018214Pseudomonas syringae pv. tomato str. DC3000, complete genome1e-1491.7BLASTN svgBLASTP svg
NC_011770:4763506*4763506478993126426Pseudomonas aeruginosa LESB58, complete genome4e-1489.7BLASTN svgBLASTP svg
NC_012691:2614603*26146032727599112997Tolumonas auensis DSM 9187, complete genome2e-1387.7BLASTN svgBLASTP svg
NC_009439:860571*86057188549124921Pseudomonas mendocina ymp, complete genome2e-1387.7BLASTN svgBLASTP svg
NC_008344:49039*4903913459985561Nitrosomonas eutropha C91, complete genome2e-1387.7BLASTN svgBLASTP svg
NC_002516:1031386*1031386109196460579Pseudomonas aeruginosa PAO1, complete genome3e-1283.8BLASTN svgBLASTP svg
NC_008027:4953432*4953432497941825987Pseudomonas entomophila L48, complete genome3e-1283.8BLASTN svgBLASTP svg
NC_008463:4566976*4566976460307636101Pseudomonas aeruginosa UCBPP-PA14, complete genome3e-1283.8BLASTN svgBLASTP svg
NC_008752:55882855882857802619199Acidovorax avenae subsp. citrulli AAC00-1, complete genome3e-1283.8BLASTN svgBLASTP svg
NC_015556:4074367*4074367410534530979Pseudomonas fulva 12-X chromosome, complete genome3e-1283.8BLASTN svgBLASTP svg
NC_004129:22348512234851226009925249Pseudomonas fluorescens Pf-5, complete genome1e-1181.8BLASTN svgBLASTP svg
NC_012660:3689223*3689223371658727365Pseudomonas fluorescens SBW25 chromosome, complete genome6e-1075.8BLASTN svgBLASTP svg
NC_009512:33345793334579336267428096Pseudomonas putida F1, complete genome6e-1075.8BLASTN svgBLASTP svg
NC_018691:22545662254566228373829173Alcanivorax dieselolei B5 chromosome, complete genome2e-0973.8BLASTN svgBLASTP svg
NC_015379:2417312*2417312246459947288Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,2e-0973.8BLASTN svgBLASTP svg
NC_007005:16050001605000162491619917Pseudomonas syringae pv. syringae B728a, complete genome1e-0871.9BLASTN svgBLASTP svg
NC_015733:25813242581324263433453011Pseudomonas putida S16 chromosome, complete genome1e-0871.9BLASTN svgBLASTP svg
NC_013716:3512950*3512950355955346604Citrobacter rodentium ICC168, complete genome4e-0869.9BLASTN svgBLASTP svg
NC_010170:14176151417615144165424040Bordetella petrii, complete genome4e-0869.9BLASTN svgBLASTP svg
NC_007086:24770402477040251517738138Xanthomonas campestris pv. campestris str. 8004, complete genome2e-0767.9BLASTN svgBLASTP svg
NC_011992:1234610*1234610125759922990Acidovorax ebreus TPSY, complete genome2e-0663.9BLASTN svgBLASTP svg
NC_010170:11032241103224112440821185Bordetella petrii, complete genome2e-0663.9BLASTN svgBLASTP svg
NC_020181:33288443328844335909930256Enterobacter aerogenes EA1509E, complete genome9e-0661.9BLASTN svgBLASTP svg
NC_012660:2045398*2045398210849663099Pseudomonas fluorescens SBW25 chromosome, complete genome9e-0661.9BLASTN svgBLASTP svg