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Query: NC_004129:3452885 Pseudomonas fluorescens Pf-5, complete genome

Start: 3452885, End: 3494840, Length: 41956

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.

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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_008027:23316172331617235762526009Pseudomonas entomophila L48, complete genome02244BLASTN svgBLASTP svg
NC_015379:35706583570658359449623839Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,01965BLASTN svgBLASTP svg
NC_010002:37853133785313380809922787Delftia acidovorans SPH-1, complete genome1e-34157BLASTN svgBLASTP svg
NC_015563:3786192*3786192382040734216Delftia sp. Cs1-4 chromosome, complete genome3e-32149BLASTN svgBLASTP svg
NC_015733:21946762194676221628521610Pseudomonas putida S16 chromosome, complete genome1e-22117BLASTN svgBLASTP svg
NC_012792:38567038567040991424245Variovorax paradoxus S110 chromosome 2, complete genome2e-1489.7BLASTN svgBLASTP svg
NC_002947:34040003404000342808524086Pseudomonas putida KT2440, complete genome9e-1487.7BLASTN svgBLASTP svg
NC_012912:16707841670784169159920816Dickeya zeae Ech1591, complete genome1e-1283.8BLASTN svgBLASTP svg
NC_008390:1293823*1293823131887025048Burkholderia cepacia AMMD chromosome 1, complete sequence2e-1179.8BLASTN svgBLASTP svg
NC_010002:42566514256651428631629666Delftia acidovorans SPH-1, complete genome3e-1075.8BLASTN svgBLASTP svg
NC_008752:2334511*2334511236012625616Acidovorax avenae subsp. citrulli AAC00-1, complete genome1e-0973.8BLASTN svgBLASTP svg
NC_015138:21101492110149213484224694Acidovorax avenae subsp. avenae ATCC 19860 chromosome, complete5e-0971.9BLASTN svgBLASTP svg
NC_010501:30131033013103303609922997Pseudomonas putida W619, complete genome5e-0971.9BLASTN svgBLASTP svg
NC_008752:36847393684739371824933511Acidovorax avenae subsp. citrulli AAC00-1, complete genome5e-0971.9BLASTN svgBLASTP svg
NC_008595:31286131286133836925509Mycobacterium avium 104, complete genome5e-0971.9BLASTN svgBLASTP svg
NC_002944:29297429297431420821235Mycobacterium avium subsp. paratuberculosis K-10, complete genome5e-0971.9BLASTN svgBLASTP svg
NC_012791:40790624079062410253023469Variovorax paradoxus S110 chromosome 1, complete genome8e-0867.9BLASTN svgBLASTP svg
NC_015563:33090973309097334276333667Delftia sp. Cs1-4 chromosome, complete genome8e-0867.9BLASTN svgBLASTP svg
NC_014355:18650031865003194366878666Candidatus Nitrospira defluvii, complete genome3e-0765.9BLASTN svgBLASTP svg
NC_007510:19598831959883201803458152Burkholderia sp. 383 chromosome 1, complete sequence1e-0663.9BLASTN svgBLASTP svg
NC_004578:31934903193490323511841629Pseudomonas syringae pv. tomato str. DC3000, complete genome5e-0661.9BLASTN svgBLASTP svg