Pre_GI: BLASTN Hits

Some Help

Query: NC_003888:6568000 Streptomyces coelicolor A3(2), complete genome

Start: 6568000, End: 6590690, Length: 22691

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_014218:88211888211890872426607Arcanobacterium haemolyticum DSM 20595 chromosome, complete genome5e-1797.6BLASTN svgBLASTP svg
NC_013172:2647716*2647716267284725132Brachybacterium faecium DSM 4810, complete genome2e-19105BLASTN svgBLASTP svg
NC_012721:24068742406874243009923226Burkholderia glumae BGR1 chromosome 2, complete genome8e-1693.7BLASTN svgBLASTP svg
NC_012721:979656979656100222522570Burkholderia glumae BGR1 chromosome 2, complete genome2e-25125BLASTN svgBLASTP svg
NC_002935:1237585*1237585131159974015Corynebacterium diphtheriae NCTC 13129, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_014329:11696741169674119345823785Corynebacterium pseudotuberculosis FRC41 chromosome, complete3e-18101BLASTN svgBLASTP svg
NC_015683:12707821270782129415323372Corynebacterium ulcerans BR-AD22 chromosome, complete genome5e-1487.7BLASTN svgBLASTP svg
NC_008025:17687561768756179085022095Deinococcus geothermalis DSM 11300, complete genome5e-20107BLASTN svgBLASTP svg
NC_008278:1876435*1876435189875422320Frankia alni ACN14a, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_014394:933449334411691423571Gallionella capsiferriformans ES-2 chromosome, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_013440:91465629146562916950022939Haliangium ochraceum DSM 14365, complete genome2e-59238BLASTN svgBLASTP svg
NC_007626:3996000*3996000401964723648Magnetospirillum magneticum AMB-1, complete genome1e-20109BLASTN svgBLASTP svg
NC_014246:1991093*1991093201986028768Mobiluncus curtisii ATCC 43063 chromosome, complete genome3e-27131BLASTN svgBLASTP svg
NC_014315:14352431435243145679721555Nitrosococcus watsoni C-113 chromosome, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_008687:22994122994125509925159Paracoccus denitrificans PD1222 chromosome 2, complete sequence1e-1179.8BLASTN svgBLASTP svg
NC_016002:25345162534516255550820993Pseudogulbenkiania sp. NH8B, complete genome2e-22115BLASTN svgBLASTP svg
NC_007005:40623114062311408347221162Pseudomonas syringae pv. syringae B728a, complete genome1e-45192BLASTN svgBLASTP svg
NC_004578:21859072185907220851022604Pseudomonas syringae pv. tomato str. DC3000, complete genome9e-34153BLASTN svgBLASTP svg
NC_019673:8161242*8161242818734226101Saccharothrix espanaensis DSM 44229 complete genome4e-70274BLASTN svgBLASTP svg
NC_013521:16193941619394164259923206Sanguibacter keddieii DSM 10542, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_013947:33471743347174338411536942Stackebrandtia nassauensis DSM 44728 chromosome, complete genome3e-61244BLASTN svgBLASTP svg
NC_003155:27304692730469275024819780Streptomyces avermitilis MA-4680, complete genome01957BLASTN svgBLASTP svg
NC_003888:40312994031299405409922801Streptomyces coelicolor A3(2), complete genome3e-43184BLASTN svgBLASTP svg
NC_021177:66626686662668668358820921Streptomyces fulvissimus DSM 40593, complete genome03616BLASTN svgBLASTP svg
NC_010572:17486681748668176920720540Streptomyces griseus subsp. griseus NBRC 13350, complete genome03620BLASTN svgBLASTP svg
NC_015953:59084675908467592977521309Streptomyces sp. SirexAA-E chromosome, complete genome01162BLASTN svgBLASTP svg
NC_015953:58657335865733590682141089Streptomyces sp. SirexAA-E chromosome, complete genome03681BLASTN svgBLASTP svg
NC_018750:1591895*1591895161414422250Streptomyces venezuelae ATCC 10712, complete genome8e-19103BLASTN svgBLASTP svg
NC_018750:63158026315802633862022819Streptomyces venezuelae ATCC 10712, complete genome03721BLASTN svgBLASTP svg
NC_014221:16999616999619527425279Truepera radiovictrix DSM 17093 chromosome, complete genome8e-25123BLASTN svgBLASTP svg