Pre_GI: BLASTN Hits

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Query: NC_003888:5042283 Streptomyces coelicolor A3(2), complete genome

Start: 5042283, End: 5087561, Length: 45279

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_018750:4688968*4688968471073821771Streptomyces venezuelae ATCC 10712, complete genome011140BLASTN svgBLASTP svg
NC_015514:1088767*1088767111461425848Cellulomonas fimi ATCC 484 chromosome, complete genome01138BLASTN svgBLASTP svg
NC_014151:2945037*2945037297209927063Cellulomonas flavigena DSM 20109 chromosome, complete genome01128BLASTN svgBLASTP svg
NC_013093:7722436*7722436776426141826Actinosynnema mirum DSM 43827, complete genome01114BLASTN svgBLASTP svg
NC_015957:639774*63977466650226729Streptomyces violaceusniger Tu 4113 chromosome, complete genome01082BLASTN svgBLASTP svg
NC_014391:6175531*6175531619392618396Micromonospora aurantiaca ATCC 27029 chromosome, complete genome01082BLASTN svgBLASTP svg
NC_013521:3285423*3285423331709931677Sanguibacter keddieii DSM 10542, complete genome01065BLASTN svgBLASTP svg
NC_019673:8763773*8763773879367729905Saccharothrix espanaensis DSM 44229 complete genome0989BLASTN svgBLASTP svg
NC_013172:2647716*2647716267284725132Brachybacterium faecium DSM 4810, complete genome0954BLASTN svgBLASTP svg
NC_003155:45920004592000463614444145Streptomyces avermitilis MA-4680, complete genome0872BLASTN svgBLASTP svg
NC_013159:380014*38001440384023827Saccharomonospora viridis DSM 43017, complete genome0767BLASTN svgBLASTP svg
NC_015145:2994418*2994418301475220335Arthrobacter phenanthrenivorans Sphe3 chromosome, complete genome0753BLASTN svgBLASTP svg
NC_015588:701606*70160672031718712Isoptericola variabilis 225 chromosome, complete genome01154BLASTN svgBLASTP svg
NC_015671:874500*87450089942324924Cellvibrio gilvus ATCC 13127 chromosome, complete genome01199BLASTN svgBLASTP svg
NC_014815:622048*62204864270320656Micromonospora sp. L5 chromosome, complete genome01411BLASTN svgBLASTP svg
NC_015953:4385419*4385419443376948351Streptomyces sp. SirexAA-E chromosome, complete genome05638BLASTN svgBLASTP svg
NC_021177:4912982*4912982493562522644Streptomyces fulvissimus DSM 40593, complete genome05582BLASTN svgBLASTP svg
NC_010572:3363830*3363830342121457385Streptomyces griseus subsp. griseus NBRC 13350, complete genome05582BLASTN svgBLASTP svg
NC_013595:1100230*1100230112822127992Streptosporangium roseum DSM 43021, complete genome01905BLASTN svgBLASTP svg
NC_014165:597000*59700065256355564Thermobispora bispora DSM 43833 chromosome, complete genome01697BLASTN svgBLASTP svg
NC_015312:5783366*5783366580217318808Pseudonocardia dioxanivorans CB1190 chromosome, complete genome01679BLASTN svgBLASTP svg
NC_009664:1569335*1569335161469045356Kineococcus radiotolerans SRS30216, complete genome01647BLASTN svgBLASTP svg
NC_013169:2147111*2147111217279325683Kytococcus sedentarius DSM 20547, complete genome01620BLASTN svgBLASTP svg
NC_013757:4707960*4707960474173433775Geodermatophilus obscurus DSM 43160, complete genome01608BLASTN svgBLASTP svg
NC_014211:258659*25865928488226224Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 plasmid01493BLASTN svgBLASTP svg
NC_003155:5957657*5957657598116223506Streptomyces avermitilis MA-4680, complete genome06125BLASTN svgBLASTP svg
NC_004369:531579*53157956209930521Corynebacterium efficiens YS-314, complete genome1e-148535BLASTN svgBLASTP svg
NC_008148:2156873*2156873217729320421Rubrobacter xylanophilus DSM 9941, complete genome3e-140507BLASTN svgBLASTP svg
NC_011896:2240990*2240990227968138692Mycobacterium leprae Br4923, complete genome8e-116426BLASTN svgBLASTP svg
NC_002677:2241065*2241065227975638692Mycobacterium leprae TN, complete genome8e-116426BLASTN svgBLASTP svg
NC_009454:316000*31600033359917600Pelotomaculum thermopropionicum SI, complete genome8e-107396BLASTN svgBLASTP svg
NC_015711:5479879*5479879550459924721Myxococcus fulvus HW-1 chromosome, complete genome3e-103385BLASTN svgBLASTP svg
NC_020126:4430142*4430142445344823307Myxococcus stipitatus DSM 14675, complete genome1e-93353BLASTN svgBLASTP svg
NC_011145:2543321*2543321257209928779Anaeromyxobacter sp. K, complete genome2e-91345BLASTN svgBLASTP svg
NC_011891:2607812*2607812263605028239Anaeromyxobacter dehalogenans 2CP-1, complete genome2e-91345BLASTN svgBLASTP svg
NC_008705:1022252*1022252104828626035Mycobacterium sp. KMS, complete genome1e-90343BLASTN svgBLASTP svg
NC_008146:1016446*1016446104459328148Mycobacterium sp. MCS, complete genome1e-90343BLASTN svgBLASTP svg
NC_007760:1806136*1806136183371527580Anaeromyxobacter dehalogenans 2CP-C, complete genome6e-89337BLASTN svgBLASTP svg
NC_009077:1027357*1027357106455537199Mycobacterium sp. JLS, complete genome9e-82313BLASTN svgBLASTP svg
NC_002516:4747154*4747154479172444571Pseudomonas aeruginosa PAO1, complete genome8e-79303BLASTN svgBLASTP svg
NC_006348:2738425*2738425276209923675Burkholderia mallei ATCC 23344 chromosome 1, complete sequence2e-76295BLASTN svgBLASTP svg
NC_021150:582011*58201160222120211Azotobacter vinelandii CA6, complete genome5e-74287BLASTN svgBLASTP svg
NC_012560:582011*58201160222120211Azotobacter vinelandii DJ, complete genome5e-74287BLASTN svgBLASTP svg
NC_014006:994500*994500101909924600Sphingobium japonicum UT26S chromosome 1, complete genome5e-71278BLASTN svgBLASTP svg
NC_013440:5509790*5509790553637126582Haliangium ochraceum DSM 14365, complete genome3e-66262BLASTN svgBLASTP svg
NC_010162:573709*57370959609922391Sorangium cellulosum 'So ce 56', complete genome1e-65260BLASTN svgBLASTP svg
NC_014377:112992*11299214783634845Thermosediminibacter oceani DSM 16646 chromosome, complete genome1e-62250BLASTN svgBLASTP svg
NC_013385:1504650*1504650152847923830Ammonifex degensii KC4, complete genome1e-62250BLASTN svgBLASTP svg
NC_015677:3787419*3787419381339525977Ramlibacter tataouinensis TTB310 chromosome, complete genome2e-58236BLASTN svgBLASTP svg
NC_010572:41814034181403420609924697Streptomyces griseus subsp. griseus NBRC 13350, complete genome2e-54222BLASTN svgBLASTP svg
NC_014910:465980*46598050776541786Alicycliphilus denitrificans BC chromosome, complete genome2e-52216BLASTN svgBLASTP svg
NC_007948:4646344*4646344469438848045Polaromonas sp. JS666, complete genome2e-52216BLASTN svgBLASTP svg
NC_018750:2696000*2696000271359917600Streptomyces venezuelae ATCC 10712, complete genome2e-51212BLASTN svgBLASTP svg
NC_003888:6103534*6103534615544651913Streptomyces coelicolor A3(2), complete genome9e-51210BLASTN svgBLASTP svg
NC_013406:6422000*6422000644307321074Paenibacillus sp. Y412MC10 chromosome, complete genome1e-49206BLASTN svgBLASTP svg
NC_015957:10403997*104039971042720123205Streptomyces violaceusniger Tu 4113 chromosome, complete genome2e-48202BLASTN svgBLASTP svg
NC_008025:669281*66928169340424124Deinococcus geothermalis DSM 11300, complete genome9e-48200BLASTN svgBLASTP svg
NC_013173:3132517*3132517316476932253Desulfomicrobium baculatum DSM 4028, complete genome6e-46194BLASTN svgBLASTP svg
NC_018750:21189072118907214335524449Streptomyces venezuelae ATCC 10712, complete genome9e-45190BLASTN svgBLASTP svg
NC_016002:379692*37969240188922198Pseudogulbenkiania sp. NH8B, complete genome5e-43184BLASTN svgBLASTP svg
NC_019960:260997*26099728725926263Prevotella dentalis DSM 3688 chromosome 1, complete sequence2e-42182BLASTN svgBLASTP svg
NC_010002:528529*52852955003421506Delftia acidovorans SPH-1, complete genome3e-41178BLASTN svgBLASTP svg
NC_010125:3506955*3506955353159924645Gluconacetobacter diazotrophicus PAl 5, complete genome8e-39170BLASTN svgBLASTP svg
NC_002939:3108907*3108907314227133365Geobacter sulfurreducens PCA, complete genome1e-37167BLASTN svgBLASTP svg
NC_016024:275845*27584529878822944Candidatus Chloracidobacterium thermophilum B chromosome chromosome3e-35159BLASTN svgBLASTP svg
NC_002927:5327094*5327094535399926906Bordetella bronchiseptica RB50, complete genome1e-34157BLASTN svgBLASTP svg
NC_009767:2051203*2051203207379822596Roseiflexus castenholzii DSM 13941, complete genome5e-34155BLASTN svgBLASTP svg
NC_010645:3720501*3720501374549924999Bordetella avium 197N, complete genome7e-30141BLASTN svgBLASTP svg
NC_008609:708886*70888674019331308Pelobacter propionicus DSM 2379, complete genome3e-29139BLASTN svgBLASTP svg
NC_007517:687276*68727671509927824Geobacter metallireducens GS-15, complete genome1e-28137BLASTN svgBLASTP svg
NC_015573:3070582*3070582309409923518Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genome2e-27133BLASTN svgBLASTP svg
NC_011750:4543135*4543135456499721863Escherichia coli IAI39 chromosome, complete genome2e-27133BLASTN svgBLASTP svg
NC_013522:1213599*1213599123493221334Thermanaerovibrio acidaminovorans DSM 6589, complete genome3e-26129BLASTN svgBLASTP svg
CU928160:4248621*4248621427441825798Escherichia coli IAI1 chromosome, complete genome4e-25125BLASTN svgBLASTP svg
NC_013510:4960500*4960500498486224363Thermomonospora curvata DSM 43183, complete genome2e-24123BLASTN svgBLASTP svg
NC_014833:3268102*3268102329097922878Ruminococcus albus 7 chromosome, complete genome1e-22117BLASTN svgBLASTP svg
NC_014220:2265882*2265882228598020099Syntrophothermus lipocalidus DSM 12680 chromosome, complete genome6e-21111BLASTN svgBLASTP svg
NC_014152:305955*30595532559919645Thermincola sp. JR, complete genome6e-21111BLASTN svgBLASTP svg
NC_015953:5444572*5444572547270028129Streptomyces sp. SirexAA-E chromosome, complete genome1e-19107BLASTN svgBLASTP svg
NC_018750:5828000*5828000585027722278Streptomyces venezuelae ATCC 10712, complete genome1e-19107BLASTN svgBLASTP svg
NC_013223:2337049*2337049236160924561Desulfohalobium retbaense DSM 5692, complete genome4e-19105BLASTN svgBLASTP svg
NC_013174:601434*60143462022318790Jonesia denitrificans DSM 20603, complete genome4e-19105BLASTN svgBLASTP svg
NC_008340:480399*48039950429523897Alkalilimnicola ehrlichei MLHE-1, complete genome4e-19105BLASTN svgBLASTP svg
NC_004307:1936725*1936725195890722183Bifidobacterium longum NCC2705, complete genome2e-18103BLASTN svgBLASTP svg
NC_010816:1989868*1989868201173521868Bifidobacterium longum DJO10A, complete genome2e-18103BLASTN svgBLASTP svg
NC_018750:43330644333064436046827405Streptomyces venezuelae ATCC 10712, complete genome6e-18101BLASTN svgBLASTP svg
NC_009921:49036884903688492656422877Frankia sp. EAN1pec, complete genome2e-1799.6BLASTN svgBLASTP svg
NC_008526:2489196*2489196251110721912Lactobacillus casei ATCC 334, complete genome2e-1799.6BLASTN svgBLASTP svg
NC_010120:2055803*2055803208173125929Neisseria meningitidis 053442, complete genome4e-1695.6BLASTN svgBLASTP svg
NC_015953:40455004045500406559920100Streptomyces sp. SirexAA-E chromosome, complete genome4e-1695.6BLASTN svgBLASTP svg
NC_007503:2063451*2063451208564322193Carboxydothermus hydrogenoformans Z-2901, complete genome2e-1593.7BLASTN svgBLASTP svg
NC_021177:4221309*4221309424940828100Streptomyces fulvissimus DSM 40593, complete genome2e-1489.7BLASTN svgBLASTP svg
NC_018419:428000*42800044959921600Secondary endosymbiont of Ctenarytaina eucalypti chromosome,2e-1489.7BLASTN svgBLASTP svg
NC_010162:10894592108945921092283428243Sorangium cellulosum 'So ce 56', complete genome9e-1487.7BLASTN svgBLASTP svg
NC_020134:301500*30150033822836729Clostridium stercorarium subsp. stercorarium DSM 8532, complete1e-1283.8BLASTN svgBLASTP svg
NC_007912:1173752*1173752119609122340Saccharophagus degradans 2-40, complete genome6e-1281.8BLASTN svgBLASTP svg
NC_013525:766848*76684878973422887Thermobaculum terrenum ATCC BAA-798 chromosome 1, complete genome2e-1179.8BLASTN svgBLASTP svg
NC_011899:124500*12450014268218183Halothermothrix orenii H 168, complete genome4e-1075.8BLASTN svgBLASTP svg
NC_014758:1573023*1573023159515322131Calditerrivibrio nitroreducens DSM 19672 chromosome, complete4e-1075.8BLASTN svgBLASTP svg
NC_015707:826649*82664984822321575Thermotoga thermarum DSM 5069 chromosome, complete genome4e-1075.8BLASTN svgBLASTP svg
NC_007626:3393940*3393940344229748358Magnetospirillum magneticum AMB-1, complete genome1e-0973.8BLASTN svgBLASTP svg
NC_010336:1117325*1117325114783030506Francisella philomiragia subsp. philomiragia ATCC 25017, complete1e-0973.8BLASTN svgBLASTP svg
NC_014355:1257105*1257105128058723483Candidatus Nitrospira defluvii, complete genome1e-0973.8BLASTN svgBLASTP svg
NC_015672:470000*47000049397723978Flexistipes sinusarabici DSM 4947 chromosome, complete genome1e-0973.8BLASTN svgBLASTP svg
NC_015696:610000*61000065257442575Francisella sp. TX077308 chromosome, complete genome1e-0973.8BLASTN svgBLASTP svg
NC_002978:4973*49733067725705Wolbachia endosymbiont of Drosophila melanogaster, complete genome6e-0971.9BLASTN svgBLASTP svg
NC_006833:838330*83833085659918270Wolbachia endosymbiont strain TRS of Brugia malayi, complete6e-0971.9BLASTN svgBLASTP svg
NC_009922:542500*54250057462332124Alkaliphilus oremlandii OhILAs, complete genome6e-0971.9BLASTN svgBLASTP svg
NC_010981:594197*59419761271418518Wolbachia pipientis, complete genome6e-0971.9BLASTN svgBLASTP svg
NC_012034:893000*89300091271619717Anaerocellum thermophilum DSM 6725, complete genome6e-0971.9BLASTN svgBLASTP svg
NC_012416:4973*49733030125329Wolbachia sp. wRi, complete genome6e-0971.9BLASTN svgBLASTP svg
NC_013960:2440453*2440453245844817996Nitrosococcus halophilus Nc4 chromosome, complete genome6e-0971.9BLASTN svgBLASTP svg
NC_014392:848195*84819587355525361Caldicellulosiruptor obsidiansis OB47 chromosome, complete genome6e-0971.9BLASTN svgBLASTP svg
NC_014721:1953708*1953708197235218645Caldicellulosiruptor kristjanssonii 177R1B chromosome, complete6e-0971.9BLASTN svgBLASTP svg
NC_014759:3572500*3572500360200929510Marivirga tractuosa DSM 4126 chromosome, complete genome6e-0971.9BLASTN svgBLASTP svg
NC_013061:987744*987744100953721794Pedobacter heparinus DSM 2366, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_014011:655266*65526668372428459Aminobacterium colombiense DSM 12261 chromosome, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_014315:2346927*2346927237964732721Nitrosococcus watsoni C-113 chromosome, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_005810:3493607*3493607351772924123Yersinia pestis biovar Microtus str. 91001, complete genome9e-0867.9BLASTN svgBLASTP svg
NC_007109:1206421*1206421123611629696Rickettsia felis URRWXCal2, complete genome9e-0867.9BLASTN svgBLASTP svg
NC_007940:1235250*1235250125869223443Rickettsia bellii RML369-C, complete genome9e-0867.9BLASTN svgBLASTP svg
NC_009648:4656187*4656187467706020874Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome9e-0867.9BLASTN svgBLASTP svg
NC_009828:469778*46977851143441657Thermotoga lettingae TMO, complete genome9e-0867.9BLASTN svgBLASTP svg
NC_009883:277409*27740930010322695Rickettsia bellii OSU 85-389, complete genome9e-0867.9BLASTN svgBLASTP svg
NC_010001:4520979*4520979454309922121Clostridium phytofermentans ISDg, complete genome9e-0867.9BLASTN svgBLASTP svg
NC_013799:775619*77561981513839520Hydrogenobacter thermophilus TK-6, complete genome9e-0867.9BLASTN svgBLASTP svg
NC_014657:1775929*1775929179657020642Caldicellulosiruptor owensensis OL chromosome, complete genome9e-0867.9BLASTN svgBLASTP svg
NC_015167:569569*56956959872729159Cellulophaga lytica DSM 7489 chromosome, complete genome9e-0867.9BLASTN svgBLASTP svg
NC_015949:1363053*1363053138275819706Caldicellulosiruptor lactoaceticus 6A chromosome, complete genome9e-0867.9BLASTN svgBLASTP svg
NC_020995:3300751*3300751333214731397Enterococcus casseliflavus EC20, complete genome9e-0867.9BLASTN svgBLASTP svg
NC_008278:296526*29652632302726502Frankia alni ACN14a, complete genome3e-0765.9BLASTN svgBLASTP svg
NC_008262:2348328*2348328236708418757Clostridium perfringens SM101, complete genome3e-0765.9BLASTN svgBLASTP svg
NC_008245:141982*14198217415532174Francisella tularensis subsp. tularensis FSC 198, complete genome3e-0765.9BLASTN svgBLASTP svg
NC_006570:141966*14196617413932174Francisella tularensis subsp. tularensis Schu 4, complete genome3e-0765.9BLASTN svgBLASTP svg
NC_006138:1245944*1245944128539239449Desulfotalea psychrophila LSv54, complete genome3e-0765.9BLASTN svgBLASTP svg
NC_003155:5163382*5163382518745824077Streptomyces avermitilis MA-4680, complete genome3e-0765.9BLASTN svgBLASTP svg
NC_008601:1658454*1658454167712618673Francisella tularensis subsp. novicida U112, complete genome3e-0765.9BLASTN svgBLASTP svg
NC_008789:942309*94230996834126033Halorhodospira halophila SL1, complete genome3e-0765.9BLASTN svgBLASTP svg
NC_009465:766893*76689380098034088Candidatus Vesicomyosocius okutanii HA, complete genome3e-0765.9BLASTN svgBLASTP svg
NC_010337:2793667*2793667283013736471Heliobacterium modesticaldum Ice1, complete genome3e-0765.9BLASTN svgBLASTP svg
NC_010677:214712*21471224609931388Francisella tularensis subsp. mediasiatica FSC147, complete genome3e-0765.9BLASTN svgBLASTP svg
NC_015259:1803266*1803266182644223177Polymorphum gilvum SL003B-26A1 chromosome, complete genome3e-0765.9BLASTN svgBLASTP svg
NC_015572:4209000*4209000424633837339Methylomonas methanica MC09 chromosome, complete genome3e-0765.9BLASTN svgBLASTP svg
NC_018643:673195*67319570659933405Alpha proteobacterium HIMB5 chromosome, complete genome3e-0765.9BLASTN svgBLASTP svg
NC_006138:3355028*3355028337842323396Desulfotalea psychrophila LSv54, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_008278:18450001845000186972124722Frankia alni ACN14a, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_015638:2045500*2045500206559920100Lacinutrix sp. 5H-3-7-4 chromosome, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_018721:2759700*2759700278187922180Psychroflexus torquis ATCC 700755 chromosome, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_020126:2883194*2883194290469121498Myxococcus stipitatus DSM 14675, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_005823:905500*90550093022224723Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1305e-0661.9BLASTN svgBLASTP svg
NC_020134:42050042050044762627127Clostridium stercorarium subsp. stercorarium DSM 8532, complete5e-0661.9BLASTN svgBLASTP svg
NC_019757:5931500*5931500594985718358Cylindrospermum stagnale PCC 7417, complete genome5e-0661.9BLASTN svgBLASTP svg
NC_014100:533322*53332256190028579Caulobacter segnis ATCC 21756 chromosome, complete genome5e-0661.9BLASTN svgBLASTP svg
NC_009053:1942973*1942973197934536373Actinobacillus pleuropneumoniae L20, complete genome5e-0661.9BLASTN svgBLASTP svg
NC_009012:3204696*3204696322373319038Clostridium thermocellum ATCC 27405, complete genome5e-0661.9BLASTN svgBLASTP svg
NC_004342:3370310*3370310339722626917Leptospira interrogans serovar Lai str. 56601 chromosome I,5e-0661.9BLASTN svgBLASTP svg