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Query: NC_003888:4750489 Streptomyces coelicolor A3(2), complete genome

Start: 4750489, End: 4774967, Length: 24479

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.

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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_013595:9994000*99940001001201918020Streptosporangium roseum DSM 43021, complete genome1e-175624BLASTN svgBLASTP svg
NC_013595:3541012*3541012356209921088Streptosporangium roseum DSM 43021, complete genome1e-33153BLASTN svgBLASTP svg
NC_003155:590500*59050061070320204Streptomyces avermitilis MA-4680, complete genome1e-33153BLASTN svgBLASTP svg
NC_008278:5855401*5855401589499139591Frankia alni ACN14a, complete genome1e-26129BLASTN svgBLASTP svg
NC_019673:63943196394319646135767039Saccharothrix espanaensis DSM 44229 complete genome2e-22115BLASTN svgBLASTP svg
NC_015434:23754392375439239859923161Verrucosispora maris AB-18-032 chromosome, complete genome1e-20109BLASTN svgBLASTP svg
NC_014391:45705674570567459134920783Micromonospora aurantiaca ATCC 27029 chromosome, complete genome5e-20107BLASTN svgBLASTP svg
NC_014815:46215524621552466359942048Micromonospora sp. L5 chromosome, complete genome5e-20107BLASTN svgBLASTP svg
NC_013729:49784014978401500265524255Kribbella flavida DSM 17836, complete genome2e-19105BLASTN svgBLASTP svg
NC_009921:86489948648994867311024117Frankia sp. EAN1pec, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_009921:1736000*1736000175436518366Frankia sp. EAN1pec, complete genome5e-1487.7BLASTN svgBLASTP svg
NC_013757:30121303012130303570423575Geodermatophilus obscurus DSM 43160, complete genome8e-1383.8BLASTN svgBLASTP svg
NC_015671:32119723211972325530043329Cellvibrio gilvus ATCC 13127 chromosome, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_013235:58496595849659587489725239Nakamurella multipartita DSM 44233, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_014151:81375581375584656132807Cellulomonas flavigena DSM 20109 chromosome, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_015856:3675592*3675592370001824427Collimonas fungivorans Ter331 chromosome, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_009077:47744994774499480744932951Mycobacterium sp. JLS, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_019673:526000*52600056212836129Saccharothrix espanaensis DSM 44229 complete genome1e-0869.9BLASTN svgBLASTP svg
NC_013510:81052581052583159921075Thermomonospora curvata DSM 43183, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_002488:16389461638946170065561710Xylella fastidiosa 9a5c, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_014666:4547873*4547873457124523373Frankia sp. EuI1c chromosome, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_018524:4988810*4988810503746448655Nocardiopsis alba ATCC BAA-2165 chromosome, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_015957:1070500*1070500110058130082Streptomyces violaceusniger Tu 4113 chromosome, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_013595:41245412456169920455Streptosporangium roseum DSM 43021, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_008278:2772726*2772726280322330498Frankia alni ACN14a, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_007777:2186000*2186000220820922210Frankia sp. CcI3, complete genome3e-0661.9BLASTN svgBLASTP svg