Pre_GI: BLASTN Hits

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Query: NC_003888:4377000 Streptomyces coelicolor A3(2), complete genome

Start: 4377000, End: 4395579, Length: 18580

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_011992:77390577390579750923605Acidovorax ebreus TPSY, complete genome9e-0969.9BLASTN svgBLASTP svg
NC_013093:48905574890557491777827222Actinosynnema mirum DSM 43827, complete genome9e-0660BLASTN svgBLASTP svg
NC_014318:7821227*7821227785959938373Amycolatopsis mediterranei U32 chromosome, complete genome4e-1487.7BLASTN svgBLASTP svg
NC_008060:2913671*2913671294708933419Burkholderia cenocepacia AU 1054 chromosome 1, complete sequence2e-0661.9BLASTN svgBLASTP svg
NC_008542:483761*48376151469930939Burkholderia cenocepacia HI2424 chromosome 1, complete sequence2e-0661.9BLASTN svgBLASTP svg
NC_010508:451184*45118447649825315Burkholderia cenocepacia MC0-3 chromosome 1, complete sequence2e-0661.9BLASTN svgBLASTP svg
NC_012724:359444*35944438978130338Burkholderia glumae BGR1 chromosome 1, complete genome9e-0969.9BLASTN svgBLASTP svg
NC_008278:81866*8186610216620301Frankia alni ACN14a, complete genome1e-0765.9BLASTN svgBLASTP svg
NC_014830:3275474*3275474329809922626Intrasporangium calvum DSM 43043 chromosome, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_013729:2157785*2157785219409936315Kribbella flavida DSM 17836, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_002678:34199634199636093318938Mesorhizobium loti MAFF303099, complete genome9e-0660BLASTN svgBLASTP svg
NC_010505:1581429*1581429160710125673Methylobacterium radiotolerans JCM 2831, complete genome9e-0969.9BLASTN svgBLASTP svg
NC_015711:31220003122000314984427845Myxococcus fulvus HW-1 chromosome, complete genome9e-0660BLASTN svgBLASTP svg
NC_014210:14403614403616380119766Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,1e-0765.9BLASTN svgBLASTP svg
NC_014210:72371972371974915525437Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,4e-1487.7BLASTN svgBLASTP svg
NC_015312:55790785579078560145622379Pseudonocardia dioxanivorans CB1190 chromosome, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_003155:399439942455920566Streptomyces avermitilis MA-4680, complete genome4e-26127BLASTN svgBLASTP svg
NC_003155:45920004592000463614444145Streptomyces avermitilis MA-4680, complete genome2e-25125BLASTN svgBLASTP svg
NC_003155:49066394906639493178025142Streptomyces avermitilis MA-4680, complete genome2e-22115BLASTN svgBLASTP svg
NC_003155:5163382*5163382518745824077Streptomyces avermitilis MA-4680, complete genome0969BLASTN svgBLASTP svg
NC_003155:3652587*3652587369577343187Streptomyces avermitilis MA-4680, complete genome3e-39170BLASTN svgBLASTP svg
NC_003888:7028165*7028165706572937565Streptomyces coelicolor A3(2), complete genome01895BLASTN svgBLASTP svg
NC_003888:6103534*6103534615544651913Streptomyces coelicolor A3(2), complete genome01895BLASTN svgBLASTP svg
NC_003888:36027533602753362646223710Streptomyces coelicolor A3(2), complete genome01158BLASTN svgBLASTP svg
NC_003888:5790104*5790104582064330540Streptomyces coelicolor A3(2), complete genome2e-120440BLASTN svgBLASTP svg
NC_021177:3997727*3997727401925421528Streptomyces fulvissimus DSM 40593, complete genome1e-20109BLASTN svgBLASTP svg
NC_021177:4124839*4124839415343928601Streptomyces fulvissimus DSM 40593, complete genome0914BLASTN svgBLASTP svg
NC_021177:4258102*4258102427958121480Streptomyces fulvissimus DSM 40593, complete genome9e-0660BLASTN svgBLASTP svg
NC_010572:3925803*3925803395628730485Streptomyces griseus subsp. griseus NBRC 13350, complete genome1e-20109BLASTN svgBLASTP svg
NC_015953:32580003258000327922821229Streptomyces sp. SirexAA-E chromosome, complete genome9e-0660BLASTN svgBLASTP svg
NC_015953:2349503*2349503238809938597Streptomyces sp. SirexAA-E chromosome, complete genome9e-160571BLASTN svgBLASTP svg
NC_015953:3782302*3782302381186629565Streptomyces sp. SirexAA-E chromosome, complete genome2e-89337BLASTN svgBLASTP svg
NC_018750:82105008210500823849928000Streptomyces venezuelae ATCC 10712, complete genome1e-0765.9BLASTN svgBLASTP svg
NC_018750:43330644333064436046827405Streptomyces venezuelae ATCC 10712, complete genome5e-29137BLASTN svgBLASTP svg
NC_014165:925009250011009917600Thermobispora bispora DSM 43833 chromosome, complete genome6e-1383.8BLASTN svgBLASTP svg
NC_013510:5115500*5115500514328527786Thermomonospora curvata DSM 43183, complete genome4e-1177.8BLASTN svgBLASTP svg