Pre_GI: BLASTP Hits

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Query: NC_003888:4031299:4048460 Streptomyces coelicolor A3(2), complete genome

Start: 4048460, End: 4048915, Length: 456

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016111:3486000:350205835020583502507450Streptomyces cattleya NRRL 8057, complete genomeheat shock protein hspR8e-61232
NC_018750:3741581:374718137471813747624444Streptomyces venezuelae ATCC 10712, complete genomeHspR, transcriptional repressor of DnaK operon3e-60229
NC_016109:4241591:425272742527274253251525Kitasatospora setae KM-6054, complete genomeputative heat shock protein HspR1e-54211
NC_015514:477935:498681498681499097417Cellulomonas fimi ATCC 484 chromosome, complete genomeregulatory protein MerR7e-30129
NC_015671:3211972:323521332352133235641429Cellvibrio gilvus ATCC 13127 chromosome, complete genomeregulatory protein MerR5e-29126
NC_014151:449732:472792472792473214423Cellulomonas flavigena DSM 20109 chromosome, complete genometranscriptional regulator, MerR family2e-28124
NC_017317:2181284:222453022245302224931402Corynebacterium ulcerans 809 chromosome, complete genomeMerR-family transcription regulator1e-24112
NC_016932:2007001:204975220497522050153402Corynebacterium pseudotuberculosis 316 chromosome, complete genomeHeat shock protein HspR3e-24110
NC_014550:2835696:283833728383372838765429Arthrobacter arilaitensis Re117, complete genomeputative heat shock protein regulator HspR7e-23105
NC_013714:2477638:249336924933692493932564Bifidobacterium dentium Bd1, complete genomeHeat shock regulatory protein hspR9e-2095.5
NC_018720:176306:219314219314219844531Bifidobacterium asteroides PRL2011 chromosome, complete genomeMerR-type-transcriptional regulator6e-1993.2
NC_012669:4118230:412352041235204123954435Beutenbergia cavernae DSM 12333, complete genometranscriptional regulator, MerR family4e-1890.5
NC_014935:711765:731616731616731990375Nitratifractor saLSUginis DSM 16511 chromosome, complete genometranscriptional regulator, merr family3e-1787.4
NC_012115:1122905:114037011403701140735366Nautilia profundicola AmH, complete genometranscriptional regulator, MerR family7e-1785.9
NC_014246:611275:640573640573641145573Mobiluncus curtisii ATCC 43063 chromosome, complete genomeMerR family transcriptional regulator3e-1580.5
NC_000918:465627:479863479863480273411Aquifex aeolicus VF5, complete genometranscriptional regulator (MerR family)2e-1167.8
NC_008699:4443000:447423044742304474520291Nocardioides sp. JS614, complete genomeregulatory protein, MerR5e-1166.6
NC_014972:2503107:251857325185732519016444Desulfobulbus propionicus DSM 2032 chromosome, complete genomeMerR family transcriptional regulator3e-1063.9
NC_014972:2503107:251152525115252511893369Desulfobulbus propionicus DSM 2032 chromosome, complete genomeMerR family transcriptional regulator6e-1063.2
NC_011830:4473583:448238044823804482793414Desulfitobacterium hafniense DCB-2, complete genometranscriptional regulator, MerR family2e-0858.2
NC_019978:91483:976329763298033402Halobacteroides halobius DSM 5150, complete genomeputative transcriptional regulator2e-0857.8
NC_015565:1511426:152422215242221524611390Desulfotomaculum carboxydivorans CO-1-SRB chromosome, completeMerR family transcriptional regulator4e-0857
NC_017223:3345902:334953933495393350378840Bordetella pertussis CS chromosome, complete genomeMerR family transcriptional regulator1e-0755.1
NC_002929:3305682:330931933093193310158840Bordetella pertussis Tohama I, complete genomeprobable MerR-family transcriptional regulator1e-0755.1
NC_012581:709234:729804729804730193390Bacillus anthracis str. CDC 684 chromosome, complete genometranscriptional repressor GlnR2e-0754.7
NC_009725:1787262:179101117910111791415405Bacillus amyloliquefaciens FZB42, complete genomeGlnR5e-0753.5
NC_019842:1847081:185083018508301851234405Bacillus amyloliquefaciens subsp. plantarum AS43.3 chromosome,HTH-type transcriptional regulator glnR5e-0753.5
NC_020410:1781884:178670117867011787105405Bacillus amyloliquefaciens subsp. plantarum UCMB5036 completetranscriptional regulator (nitrogen metabolism)5e-0753.5
NC_020272:2077795:210868721086872109091405Bacillus amyloliquefaciens IT-45, complete genomeHTH-type transcriptional regulator glnR5e-0753.5
NC_014479:1831404:183557418355741835981408Bacillus subtilis subsp. spizizenii str. W23 chromosome, completenitrogen metabolism transcriptional regulaort7e-0753.1
UCMB5137:1375622:138112913811291381536408Bacillus atrophaeus UCMB-5137transcriptional regulator (nitrogen metabolism)6e-0753.1
NC_020244:1875834:187720918772091877616408Bacillus subtilis XF-1, complete genometranscriptional regulator (nitrogen metabolism)6e-0753.1
NC_016047:1978312:198206919820691982476408Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completeHTH-type transcriptional regulator GlnR6e-0753.1
NC_000964:1873398:187715518771551877562408Bacillus subtilis subsp. subtilis str. 168, complete genometranscriptional regulator6e-0753.1
NC_014551:1872000:187600218760021876403402Bacillus amyloliquefaciens DSM 7, complete genometranscriptional regulator (nitrogen metabolism)5e-0753.1
NC_017190:1832402:183615118361511836552402Bacillus amyloliquefaciens LL3 chromosome, complete genometranscriptional regulator (nitrogen metabolism)5e-0753.1
NC_006270:1936952:194682119468211947228408Bacillus licheniformis ATCC 14580, complete genometranscriptional regulator7e-0752.8
NC_006322:1932847:194766719476671948074408Bacillus licheniformis ATCC 14580, complete genomeGlnR7e-0752.8
NC_014215:1929000:193028519302851930704420Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1,Heat shock protein transcriptional repressor HspR1 (Hspr1 protein)7e-0752.8
NC_009443:142500:146537146537146959423Streptococcus suis 98HAH33, complete genometranscriptional regulator3e-0650.8
NC_012926:140000:146716146716147087372Streptococcus suis BM407 chromosome, complete genomeMerR family transcriptional regulator3e-0650.8
NC_012924:142500:146681146681147052372Streptococcus suis SC84, complete genomeMerR family transcriptional regulator3e-0650.8
NC_012925:140000:146876146876147247372Streptococcus suis P1/7, complete genomeMerR family regulatory protein3e-0650.8