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Query: NC_003888:4031299:4045944 Streptomyces coelicolor A3(2), complete genome

Start: 4045944, End: 4047128, Length: 1185

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003888:4031299:4043991404399140450011011Streptomyces coelicolor A3(2), complete genomeregulatory protein1e-71270
NC_018750:3741581:3745578374557837465821005Streptomyces venezuelae ATCC 10712, complete genomeputative regulatory protein1e-66254
NC_003888:4031299:404499840449984045981984Streptomyces coelicolor A3(2), complete genomeregulatory protein1e-59230
NC_013131:1593840:1617665161766516187621098Catenulispora acidiphila DSM 44928, complete genometranscriptional regulator, LuxR family3e-22106
NC_016109:4241591:425345142534514254434984Kitasatospora setae KM-6054, complete genomeputative regulatory protein6e-1995.5
NC_009953:1581088:159592015959201596891972Salinispora arenicola CNS-205 chromosome, complete genomeLuxR family transcriptional regulator6e-1892
NC_016109:4241591:425564142556414256624984Kitasatospora setae KM-6054, complete genomeputative LuxR family transcriptional regulator5e-1789.4
NC_016109:4241591:425987442598744260851978Kitasatospora setae KM-6054, complete genomeputative LuxR family transcriptional regulator2e-1687
NC_016109:4241591:4258581425858142595881008Kitasatospora setae KM-6054, complete genomeputative LuxR family transcriptional regulator5e-1685.9
NC_016109:4241591:4260952426095242621511200Kitasatospora setae KM-6054, complete genomeputative LuxR family transcriptional regulator1e-1584.3
NC_016109:4241591:425763142576314258584954Kitasatospora setae KM-6054, complete genomeputative LuxR family transcriptional regulator7e-1582
NC_016109:4241591:4256621425662142576341014Kitasatospora setae KM-6054, complete genomeputative LuxR family transcriptional regulator2e-1480.5
NC_016111:4588021:4589933458993345910121080Streptomyces cattleya NRRL 8057, complete genomeLuxR family transcriptional regulator1e-1378.2
NC_015588:95697:9723597235982661032Isoptericola variabilis 225 chromosome, complete genomeregulatory protein LuxR1e-1067.8
NC_013595:4796436:482248748224874823440954Streptosporangium roseum DSM 43021, complete genomeresponse regulator receiver protein2e-0860.5
NC_013595:196493:215303215303216028726Streptosporangium roseum DSM 43021, complete genomeresponse regulator receiver protein3e-0757
NC_014210:2107738:210912221091222109877756Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,response regulator receiver protein1e-0654.7
NC_018750:3141196:314421431442143145164951Streptomyces venezuelae ATCC 10712, complete genomeputative regulatory protein2e-0653.5
NC_014355:2635500:265823626582362658943708Candidatus Nitrospira defluvii, complete genomeputative LuxR family response regulator9e-0652