Pre_GI: BLASTP Hits

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Query: NC_003888:4031299:4044998 Streptomyces coelicolor A3(2), complete genome

Start: 4044998, End: 4045981, Length: 984

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003888:4031299:4043991404399140450011011Streptomyces coelicolor A3(2), complete genomeregulatory protein1e-77290
NC_018750:3741581:3745578374557837465821005Streptomyces venezuelae ATCC 10712, complete genomeputative regulatory protein3e-75281
NC_003888:4031299:4045944404594440471281185Streptomyces coelicolor A3(2), complete genomeregulatory protein1e-62240
NC_016109:4241591:425564142556414256624984Kitasatospora setae KM-6054, complete genomeputative LuxR family transcriptional regulator3e-22105
NC_016109:4241591:4260952426095242621511200Kitasatospora setae KM-6054, complete genomeputative LuxR family transcriptional regulator4e-21102
NC_016109:4241591:425763142576314258584954Kitasatospora setae KM-6054, complete genomeputative LuxR family transcriptional regulator2e-1893.6
NC_009953:1581088:159592015959201596891972Salinispora arenicola CNS-205 chromosome, complete genomeLuxR family transcriptional regulator5e-1892
NC_013131:1593840:1617665161766516187621098Catenulispora acidiphila DSM 44928, complete genometranscriptional regulator, LuxR family1e-1790.5
NC_016109:4241591:4256621425662142576341014Kitasatospora setae KM-6054, complete genomeputative LuxR family transcriptional regulator5e-1789
NC_016109:4241591:425987442598744260851978Kitasatospora setae KM-6054, complete genomeputative LuxR family transcriptional regulator1e-1687.4
NC_016109:4241591:425345142534514254434984Kitasatospora setae KM-6054, complete genomeputative regulatory protein6e-1685.1
NC_016109:4241591:4258581425858142595881008Kitasatospora setae KM-6054, complete genomeputative LuxR family transcriptional regulator3e-1582.8
NC_016111:4588021:4589933458993345910121080Streptomyces cattleya NRRL 8057, complete genomeLuxR family transcriptional regulator8e-1271.6
NC_018750:3141196:314421431442143145164951Streptomyces venezuelae ATCC 10712, complete genomeputative regulatory protein4e-1065.9
NC_013595:4796436:482248748224874823440954Streptosporangium roseum DSM 43021, complete genomeresponse regulator receiver protein1e-0861.2
NC_013595:196493:215303215303216028726Streptosporangium roseum DSM 43021, complete genomeresponse regulator receiver protein2e-0860.1
NC_015588:95697:9723597235982661032Isoptericola variabilis 225 chromosome, complete genomeregulatory protein LuxR5e-0858.9
NC_009921:3999040:401613540161354016815681Frankia sp. EAN1pec, complete genometwo component transcriptional regulator, LuxR family6e-0652