Pre_GI: BLASTP Hits

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Query: NC_003888:4031299:4043991 Streptomyces coelicolor A3(2), complete genome

Start: 4043991, End: 4045001, Length: 1011

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_018750:3741581:3745578374557837465821005Streptomyces venezuelae ATCC 10712, complete genomeputative regulatory protein5e-107387
NC_003888:4031299:404499840449984045981984Streptomyces coelicolor A3(2), complete genomeregulatory protein1e-77290
NC_003888:4031299:4045944404594440471281185Streptomyces coelicolor A3(2), complete genomeregulatory protein8e-75280
NC_009953:1581088:159592015959201596891972Salinispora arenicola CNS-205 chromosome, complete genomeLuxR family transcriptional regulator1e-22107
NC_013131:1593840:1617665161766516187621098Catenulispora acidiphila DSM 44928, complete genometranscriptional regulator, LuxR family2e-22107
NC_016109:4241591:425345142534514254434984Kitasatospora setae KM-6054, complete genomeputative regulatory protein3e-21102
NC_016111:4588021:4589933458993345910121080Streptomyces cattleya NRRL 8057, complete genomeLuxR family transcriptional regulator1e-20100
NC_016109:4241591:425564142556414256624984Kitasatospora setae KM-6054, complete genomeputative LuxR family transcriptional regulator9e-2097.8
NC_016109:4241591:4260952426095242621511200Kitasatospora setae KM-6054, complete genomeputative LuxR family transcriptional regulator3e-1996.3
NC_016109:4241591:425763142576314258584954Kitasatospora setae KM-6054, complete genomeputative LuxR family transcriptional regulator8e-1994.7
NC_016109:4241591:4256621425662142576341014Kitasatospora setae KM-6054, complete genomeputative LuxR family transcriptional regulator3e-1789.7
NC_016109:4241591:4258581425858142595881008Kitasatospora setae KM-6054, complete genomeputative LuxR family transcriptional regulator2e-1583.6
NC_016109:4241591:425987442598744260851978Kitasatospora setae KM-6054, complete genomeputative LuxR family transcriptional regulator7e-1581.6
NC_013595:4796436:482248748224874823440954Streptosporangium roseum DSM 43021, complete genomeresponse regulator receiver protein2e-1273.2
NC_015588:95697:9723597235982661032Isoptericola variabilis 225 chromosome, complete genomeregulatory protein LuxR4e-1169.3
NC_018750:3141196:314421431442143145164951Streptomyces venezuelae ATCC 10712, complete genomeputative regulatory protein6e-0755.5
NC_014210:2107738:210912221091222109877756Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,response regulator receiver protein1e-0654.3
NC_013947:326980:3269803269803279931014Stackebrandtia nassauensis DSM 44728 chromosome, complete genometranscriptional regulator, LuxR family3e-0653.1
NC_013595:196493:215303215303216028726Streptosporangium roseum DSM 43021, complete genomeresponse regulator receiver protein6e-0652