Pre_GI: BLASTN Hits

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Query: NC_003198:1336894 Salmonella enterica subsp. enterica serovar Typhi str. CT18,

Start: 1336894, End: 1360365, Length: 23472

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_013416:12468801246880126998923110Aggregatibacter actinomycetemcomitans D11S-1, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_012913:77264177264179553422894Aggregatibacter aphrophilus NJ8700, complete genome1e-1799.6BLASTN svgBLASTP svg
NC_014910:42072274207227422797420748Alicycliphilus denitrificans BC chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_008392:66600066600068894522946Burkholderia cepacia AMMD chromosome 3, complete sequence3e-0661.9BLASTN svgBLASTP svg
NC_015376:17528831752883177658023698Burkholderia gladioli BSR3 chromosome chromosome 2, complete2e-0765.9BLASTN svgBLASTP svg
NC_007951:22336762233676225569422019Burkholderia xenovorans LB400 chromosome 1, complete sequence3e-0971.9BLASTN svgBLASTP svg
NC_009792:13455001345500136809322594Citrobacter koseri ATCC BAA-895, complete genome01174BLASTN svgBLASTP svg
NC_013716:1756545*1756545177694320399Citrobacter rodentium ICC168, complete genome6e-140505BLASTN svgBLASTP svg
NC_013282:1804909*1804909182709922191Cronobacter turicensis, complete genome8e-1383.8BLASTN svgBLASTP svg
NC_013282:18424121842412187000127590Cronobacter turicensis, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_014500:31752833175283321401838736Dickeya dadantii 3937 chromosome, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_013592:1668092*1668092170683538744Dickeya dadantii Ech586, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_020181:96959996959999375524157Enterobacter aerogenes EA1509E, complete genome0817BLASTN svgBLASTP svg
NC_015663:44479844447984447024622263Enterobacter aerogenes KCTC 2190 chromosome, complete genome0785BLASTN svgBLASTP svg
NC_014121:20906302090630212903438405Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete8e-1383.8BLASTN svgBLASTP svg
NC_014121:1848971*1848971187217723207Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete1e-51212BLASTN svgBLASTP svg
NC_020063:3690308*3690308375363663329Enterobacteriaceae bacterium strain FGI 57, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_020063:2449554*2449554247289823345Enterobacteriaceae bacterium strain FGI 57, complete genome1e-97365BLASTN svgBLASTP svg
NC_012214:19745001974500201677342274Erwinia pyrifoliae Ep1/96, complete genome9e-62246BLASTN svgBLASTP svg
NC_008253:334467*33446741611981653Escherichia coli 536, complete genome3e-80307BLASTN svgBLASTP svg
NC_008563:318993*31899336258343591Escherichia coli APEC O1, complete genome1e-82315BLASTN svgBLASTP svg
NC_004431:364000*36400042492660927Escherichia coli CFT073, complete genome3e-80307BLASTN svgBLASTP svg
NC_009800:349592*34959238017230581Escherichia coli HS, complete genome2e-75291BLASTN svgBLASTP svg
NC_000913:303719*30371932647122753Escherichia coli K12, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_000913:4462782*4462782448642323642Escherichia coli K12, complete genome3e-18101BLASTN svgBLASTP svg
NC_000913:1404000*1404000142700823009Escherichia coli K12, complete genome2e-108400BLASTN svgBLASTP svg
NC_010498:301000*30100034338442385Escherichia coli SMS-3-5, complete genome2e-84321BLASTN svgBLASTP svg
NC_010498:4821519*4821519484497023452Escherichia coli SMS-3-5, complete genome8e-1693.7BLASTN svgBLASTP svg
NC_010473:27994827994830350723560Escherichia coli str. K-12 substr. DH10B, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_010473:4564590*4564590458823123642Escherichia coli str. K-12 substr. DH10B, complete genome3e-18101BLASTN svgBLASTP svg
NC_010473:1493983*1493983151640422422Escherichia coli str. K-12 substr. DH10B, complete genome2e-108400BLASTN svgBLASTP svg
NC_011751:348000*34800037070122702Escherichia coli UMN026 chromosome, complete genome1e-79305BLASTN svgBLASTP svg
NC_007946:289425*28942536040270978Escherichia coli UTI89, complete genome1e-82315BLASTN svgBLASTP svg
CP002185:1493280*1493280151559922320Escherichia coli W, complete genome2e-96361BLASTN svgBLASTP svg
AC_000091:30371930371932647122753Escherichia coli W3110 DNA, complete genome2e-1075.8BLASTN svgBLASTP svg
AC_000091:4472000*4472000449474322744Escherichia coli W3110 DNA, complete genome3e-18101BLASTN svgBLASTP svg
AC_000091:1407693*1407693143069823006Escherichia coli W3110 DNA, complete genome2e-108400BLASTN svgBLASTP svg
NC_009648:14876921487692151904531354Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome2e-50208BLASTN svgBLASTP svg
NC_012968:1352463*1352463137108218620Methylotenera mobilis JLW8, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_012917:23627252362725238725724533Pectobacterium carotovorum subsp. carotovorum PC1, complete genome8e-1383.8BLASTN svgBLASTP svg
NC_012917:26410002641000266615925160Pectobacterium carotovorum subsp. carotovorum PC1, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_015379:42492384249238427562626389Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,1e-1179.8BLASTN svgBLASTP svg
NC_021066:1712905*1712905175859645692Raoultella ornithinolytica B6, complete genome1e-60242BLASTN svgBLASTP svg
NC_021066:17780001778000179688518886Raoultella ornithinolytica B6, complete genome8e-59236BLASTN svgBLASTP svg
NC_010067:1300606*1300606132180421199Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete2e-0765.9BLASTN svgBLASTP svg
NC_011149:1429523*1429523149808768565Salmonella enterica subsp. enterica serovar Agona str. SL483,042840BLASTN svgBLASTP svg
NC_006905:13424741342474137811135638Salmonella enterica subsp. enterica serovar Choleraesuis str2e-161577BLASTN svgBLASTP svg
NC_006905:17660001766000178860222603Salmonella enterica subsp. enterica serovar Choleraesuis str020860BLASTN svgBLASTP svg
NC_011080:17500001750000177244622447Salmonella enterica subsp. enterica serovar Newport str. SL254,022650BLASTN svgBLASTP svg
NC_006511:12731621273162129663123470Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC042780BLASTN svgBLASTP svg
NC_004631:16235111623511164614622636Salmonella enterica subsp. enterica serovar Typhi Ty2, complete040780BLASTN svgBLASTP svg
NC_003197:17536631753663177609922437Salmonella typhimurium LT2, complete genome036480BLASTN svgBLASTP svg
NC_009092:2282437*2282437232744145005Shewanella loihica PV-4, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_010658:4494103*4494103451209917997Shigella boydii CDC 3083-94, complete genome5e-23117BLASTN svgBLASTP svg
NC_007613:4217557*4217557425611838562Shigella boydii Sb227, complete genome5e-23117BLASTN svgBLASTP svg
NC_008258:18738051873805189655222748Shigella flexneri 5 str. 8401, complete genome0751BLASTN svgBLASTP svg
NC_016010:1247008*1247008127542528418Xanthomonas axonopodis pv. citrumelo F1 chromosome, complete2e-31145BLASTN svgBLASTP svg