Pre_GI: BLASTN Hits

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Query: NC_003155:6444500 Streptomyces avermitilis MA-4680, complete genome

Start: 6444500, End: 6466717, Length: 22218

Host Lineage: Streptomyces avermitilis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This strain (ATCC 31267) was isolated and characterized in 1978 by R. Burg and colleagues from a soil sample collected in Shizuoka Prefecture, Japan. Antibiotic-producing bacterium. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This organism is a well known producer of the anti-parasitic agent avermectin which is widely used to rid livestock of worm and insect infestations and to protect large numbers of people from river blindness in sub-Saharan Africa.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_008578:1827605*1827605185916131557Acidothermus cellulolyticus 11B, complete genome4e-30141BLASTN svgBLASTP svg
NC_011992:1179084*1179084120383024747Acidovorax ebreus TPSY, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_014910:2015627*2015627203840722781Alicycliphilus denitrificans BC chromosome, complete genome4e-1177.8BLASTN svgBLASTP svg
NC_007651:2639553*2639553269172452172Burkholderia thailandensis E264 chromosome I, complete sequence3e-0661.9BLASTN svgBLASTP svg
NC_014151:40213944021394406852347130Cellulomonas flavigena DSM 20109 chromosome, complete genome4e-30141BLASTN svgBLASTP svg
NC_005085:1096000*1096000111962323624Chromobacterium violaceum ATCC 12472, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_007963:1370903*1370903139119320291Chromohalobacter salexigens DSM 3043, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_010407:151599*15159917558923991Clavibacter michiganensis subsp. sepedonicus chromosome, complete2e-19105BLASTN svgBLASTP svg
NC_015856:3675592*3675592370001824427Collimonas fungivorans Ter331 chromosome, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_004369:43759443759445872021127Corynebacterium efficiens YS-314, complete genome2e-19105BLASTN svgBLASTP svg
NC_007164:511171*51117153769026520Corynebacterium jeikeium K411, complete genome9e-31143BLASTN svgBLASTP svg
NC_015859:27264142726414274559919186Corynebacterium variabile DSM 44702 chromosome, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_013282:37811493781149380484323695Cronobacter turicensis, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_015563:47734154773415479788824474Delftia sp. Cs1-4 chromosome, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_012489:65231965231969038838070Gemmatimonas aurantiaca T-27, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_013757:27068352706835275100644172Geodermatophilus obscurus DSM 43160, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_013441:27888062788806282218133376Gordonia bronchialis DSM 43247, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_013441:27614592761459278449623038Gordonia bronchialis DSM 43247, complete genome4e-36161BLASTN svgBLASTP svg
NC_013169:1058463*1058463108536926907Kytococcus sedentarius DSM 20547, complete genome2e-28135BLASTN svgBLASTP svg
NC_012559:16359221635922165638420463Laribacter hongkongensis HLHK9, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_019973:61024426102442613434331902Mesorhizobium australicum WSM2073, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_014923:1680095*1680095171239832304Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, complete3e-0971.9BLASTN svgBLASTP svg
NC_009077:47744994774499480744932951Mycobacterium sp. JLS, complete genome1e-20109BLASTN svgBLASTP svg
NC_009077:4671417*4671417469950728091Mycobacterium sp. JLS, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_008705:15577111557711161059952889Mycobacterium sp. KMS, complete genome3e-18101BLASTN svgBLASTP svg
NC_008146:15776041577604160675629153Mycobacterium sp. MCS, complete genome3e-18101BLASTN svgBLASTP svg
NC_014814:54229725422972546967946708Mycobacterium sp. Spyr1 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_014814:3364336*3364336338651822183Mycobacterium sp. Spyr1 chromosome, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_019974:1184871*1184871127279187921Natronococcus occultus SP4, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_014837:2709813*2709813273364723835Pantoea sp. At-9b chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_006085:15246152464566630421Propionibacterium acnes KPA171202, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_014039:23863472386347240678020434Propionibacterium acnes SK137 chromosome, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_014039:15236152364170426469Propionibacterium acnes SK137 chromosome, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_011770:28042182804218282883824621Pseudomonas aeruginosa LESB58, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_009439:91853491853494240823875Pseudomonas mendocina ymp, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_009434:3611738*36117383748875137138Pseudomonas stutzeri A1501, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_009434:20065002006500203099424495Pseudomonas stutzeri A1501, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_015740:2692023*2692023271734525323Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, complete3e-0971.9BLASTN svgBLASTP svg
NC_015740:18453701845370186638521016Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, complete1e-0869.9BLASTN svgBLASTP svg
NC_004578:39211993921199394421523017Pseudomonas syringae pv. tomato str. DC3000, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_013521:10793710793712943721501Sanguibacter keddieii DSM 10542, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_020211:35356223535622355884723226Serratia marcescens WW4, complete genome5e-1797.6BLASTN svgBLASTP svg
NC_009092:18748881874888191420239315Shewanella loihica PV-4, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_014006:850763*85076390963758875Sphingobium japonicum UT26S chromosome 1, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_003155:5005913*5005913502743521523Streptomyces avermitilis MA-4680, complete genome02924BLASTN svgBLASTP svg
NC_021177:71596547159654718278823135Streptomyces fulvissimus DSM 40593, complete genome0848BLASTN svgBLASTP svg
NC_010572:12937861293786131684623061Streptomyces griseus subsp. griseus NBRC 13350, complete genome0900BLASTN svgBLASTP svg
NC_015953:25121522512152253676224611Streptomyces sp. SirexAA-E chromosome, complete genome2e-28135BLASTN svgBLASTP svg
NC_015957:33421693342169336097518807Streptomyces violaceusniger Tu 4113 chromosome, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_013595:68314806831480685414322664Streptosporangium roseum DSM 43021, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_014831:19066911906691195238745697Thermaerobacter marianensis DSM 12885 chromosome, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_013510:74704274704277346526424Thermomonospora curvata DSM 43183, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_014158:73344733449383820495Tsukamurella paurometabola DSM 20162 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_013722:2810721*2810721284465133931Xanthomonas albilineans, complete genome7e-0763.9BLASTN svgBLASTP svg