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Query: NC_003155:622993 Streptomyces avermitilis MA-4680, complete genome

Start: 622993, End: 654326, Length: 31334

Host Lineage: Streptomyces avermitilis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This strain (ATCC 31267) was isolated and characterized in 1978 by R. Burg and colleagues from a soil sample collected in Shizuoka Prefecture, Japan. Antibiotic-producing bacterium. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This organism is a well known producer of the anti-parasitic agent avermectin which is widely used to rid livestock of worm and insect infestations and to protect large numbers of people from river blindness in sub-Saharan Africa.

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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_003888:86138488613848863240818561Streptomyces coelicolor A3(2), complete genome01110BLASTN svgBLASTP svg
NC_015957:49635004963500498135217853Streptomyces violaceusniger Tu 4113 chromosome, complete genome0831BLASTN svgBLASTP svg
NC_018750:67173156717315674058623272Streptomyces venezuelae ATCC 10712, complete genome5e-147529BLASTN svgBLASTP svg
NC_008697:20200020200022487622877Nocardioides sp. JS614 plasmid pNOCA01, complete sequence7e-131476BLASTN svgBLASTP svg
NC_013739:55359455535945556853032586Conexibacter woesei DSM 14684, complete genome4e-117430BLASTN svgBLASTP svg
NC_013757:14388121438812147359934788Geodermatophilus obscurus DSM 43160, complete genome1e-113418BLASTN svgBLASTP svg
NC_014391:60008346000834602389723064Micromonospora aurantiaca ATCC 27029 chromosome, complete genome1e-83319BLASTN svgBLASTP svg
NC_015957:19685871968587200687438288Streptomyces violaceusniger Tu 4113 chromosome, complete genome3e-74287BLASTN svgBLASTP svg
NC_003155:32097932097933918518207Streptomyces avermitilis MA-4680, complete genome2e-63252BLASTN svgBLASTP svg
NC_015953:18609461860946187926918324Streptomyces sp. SirexAA-E chromosome, complete genome1e-42182BLASTN svgBLASTP svg
NC_021177:14182131418213144186323651Streptomyces fulvissimus DSM 40593, complete genome6e-42180BLASTN svgBLASTP svg
NC_003155:77721677721679528518070Streptomyces avermitilis MA-4680, complete genome5e-33151BLASTN svgBLASTP svg
NC_018750:75404507540450756160921160Streptomyces venezuelae ATCC 10712, complete genome2e-26129BLASTN svgBLASTP svg
NC_013235:17615391761539178059919061Nakamurella multipartita DSM 44233, complete genome7e-26127BLASTN svgBLASTP svg
NC_013595:41245412456169920455Streptosporangium roseum DSM 43021, complete genome3e-25125BLASTN svgBLASTP svg
NC_015951:46000460007890132902Streptomyces violaceusniger Tu 4113 plasmid pSTRVI01, complete5e-24121BLASTN svgBLASTP svg
NC_003155:29987329987331809918227Streptomyces avermitilis MA-4680, complete genome1e-21113BLASTN svgBLASTP svg
NC_013510:22887462288746230946520720Thermomonospora curvata DSM 43183, complete genome2e-20109BLASTN svgBLASTP svg
NC_009664:43777774377777440126323487Kineococcus radiotolerans SRS30216, complete genome3e-19105BLASTN svgBLASTP svg
NC_003888:5114147*5114147515215738011Streptomyces coelicolor A3(2), complete genome2e-1799.6BLASTN svgBLASTP svg
NC_018750:4728870*4728870475950630637Streptomyces venezuelae ATCC 10712, complete genome4e-1591.7BLASTN svgBLASTP svg
NC_003155:5987000*5987000601614029141Streptomyces avermitilis MA-4680, complete genome4e-1591.7BLASTN svgBLASTP svg
NC_018524:17459491745949178032034372Nocardiopsis alba ATCC BAA-2165 chromosome, complete genome2e-1489.7BLASTN svgBLASTP svg
NC_015953:3782302*3782302381186629565Streptomyces sp. SirexAA-E chromosome, complete genome6e-1487.7BLASTN svgBLASTP svg
NC_010572:3314500*3314500334441929920Streptomyces griseus subsp. griseus NBRC 13350, complete genome3e-1385.7BLASTN svgBLASTP svg
NC_019673:8161242*8161242818734226101Saccharothrix espanaensis DSM 44229 complete genome2e-1179.8BLASTN svgBLASTP svg
NC_015953:4385419*4385419443376948351Streptomyces sp. SirexAA-E chromosome, complete genome2e-1179.8BLASTN svgBLASTP svg
NC_013131:79452807945280799850753228Catenulispora acidiphila DSM 44928, complete genome2e-1179.8BLASTN svgBLASTP svg
NC_003155:883500*88350090259219093Streptomyces avermitilis MA-4680, complete genome6e-1177.8BLASTN svgBLASTP svg
NC_015957:690817*69081771136520549Streptomyces violaceusniger Tu 4113 chromosome, complete genome6e-1177.8BLASTN svgBLASTP svg
NC_021177:74620007462000748896926970Streptomyces fulvissimus DSM 40593, complete genome6e-1177.8BLASTN svgBLASTP svg
NC_021177:78157917815791783813922349Streptomyces fulvissimus DSM 40593, complete genome6e-1177.8BLASTN svgBLASTP svg
NC_021177:4124839*4124839415343928601Streptomyces fulvissimus DSM 40593, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_015953:2349503*2349503238809938597Streptomyces sp. SirexAA-E chromosome, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_013131:9903320*9903320995737154052Catenulispora acidiphila DSM 44928, complete genome6e-0867.9BLASTN svgBLASTP svg
NC_013595:52822075282207531442932223Streptosporangium roseum DSM 43021, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_003888:7866148*7866148789016824021Streptomyces coelicolor A3(2), complete genome4e-0661.9BLASTN svgBLASTP svg