Pre_GI: BLASTN Hits

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Query: NC_003155:5987000 Streptomyces avermitilis MA-4680, complete genome

Start: 5987000, End: 6016140, Length: 29141

Host Lineage: Streptomyces avermitilis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This strain (ATCC 31267) was isolated and characterized in 1978 by R. Burg and colleagues from a soil sample collected in Shizuoka Prefecture, Japan. Antibiotic-producing bacterium. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This organism is a well known producer of the anti-parasitic agent avermectin which is widely used to rid livestock of worm and insect infestations and to protect large numbers of people from river blindness in sub-Saharan Africa.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_010572:3314500*3314500334441929920Streptomyces griseus subsp. griseus NBRC 13350, complete genome06401BLASTN svgBLASTP svg
NC_021177:4945878*4945878496359917722Streptomyces fulvissimus DSM 40593, complete genome06338BLASTN svgBLASTP svg
NC_003888:5114147*5114147515215738011Streptomyces coelicolor A3(2), complete genome06284BLASTN svgBLASTP svg
NC_018750:4728870*4728870475950630637Streptomyces venezuelae ATCC 10712, complete genome05519BLASTN svgBLASTP svg
NC_015953:4385419*4385419443376948351Streptomyces sp. SirexAA-E chromosome, complete genome04373BLASTN svgBLASTP svg
NC_015957:690817*69081771136520549Streptomyces violaceusniger Tu 4113 chromosome, complete genome03977BLASTN svgBLASTP svg
NC_003155:590500*59050061070320204Streptomyces avermitilis MA-4680, complete genome01699BLASTN svgBLASTP svg
NC_014165:597000*59700065256355564Thermobispora bispora DSM 43833 chromosome, complete genome0769BLASTN svgBLASTP svg
NC_009664:1569335*1569335161469045356Kineococcus radiotolerans SRS30216, complete genome0718BLASTN svgBLASTP svg
NC_015514:1088767*1088767111461425848Cellulomonas fimi ATCC 484 chromosome, complete genome0698BLASTN svgBLASTP svg
NC_013093:7722436*7722436776426141826Actinosynnema mirum DSM 43827, complete genome0698BLASTN svgBLASTP svg
NC_019673:8734993*8734993875416019168Saccharothrix espanaensis DSM 44229 complete genome0658BLASTN svgBLASTP svg
NC_014666:7641060*7641060766551924460Frankia sp. EuI1c chromosome, complete genome0648BLASTN svgBLASTP svg
NC_014151:2945037*2945037297209927063Cellulomonas flavigena DSM 20109 chromosome, complete genome2e-171611BLASTN svgBLASTP svg
NC_014211:258659*25865928488226224Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 plasmid2e-162581BLASTN svgBLASTP svg
NC_015588:701606*70160672031718712Isoptericola variabilis 225 chromosome, complete genome1e-159571BLASTN svgBLASTP svg
NC_012803:1839809*1839809185813118323Micrococcus luteus NCTC 2665, complete genome1e-156561BLASTN svgBLASTP svg
NC_013595:1100230*1100230112822127992Streptosporangium roseum DSM 43021, complete genome1e-156561BLASTN svgBLASTP svg
NC_013757:4707960*4707960474173433775Geodermatophilus obscurus DSM 43160, complete genome1e-156561BLASTN svgBLASTP svg
NC_013172:2647716*2647716267284725132Brachybacterium faecium DSM 4810, complete genome5e-147529BLASTN svgBLASTP svg
NC_010617:665830*66583069497729148Kocuria rhizophila DC2201, complete genome5e-144519BLASTN svgBLASTP svg
NC_014391:6175531*6175531619392618396Micromonospora aurantiaca ATCC 27029 chromosome, complete genome7e-140505BLASTN svgBLASTP svg
NC_014815:622048*62204864270320656Micromonospora sp. L5 chromosome, complete genome7e-140505BLASTN svgBLASTP svg
NC_011886:2950411*2950411298659936189Arthrobacter chlorophenolicus A6, complete genome4e-132480BLASTN svgBLASTP svg
NC_009480:2932108*2932108295389521788Clavibacter michiganensis subsp. michiganensis NCPPB 382, complete3e-130474BLASTN svgBLASTP svg
NC_010407:316320*31632033498318664Clavibacter michiganensis subsp. sepedonicus chromosome, complete6e-128466BLASTN svgBLASTP svg
NC_013521:3285423*3285423331709931677Sanguibacter keddieii DSM 10542, complete genome2e-127464BLASTN svgBLASTP svg
NC_006361:792904*79290481281219909Nocardia farcinica IFM 10152, complete genome1e-126462BLASTN svgBLASTP svg
NC_013169:2147111*2147111217279325683Kytococcus sedentarius DSM 20547, complete genome2e-124454BLASTN svgBLASTP svg
NC_015312:5783366*5783366580217318808Pseudonocardia dioxanivorans CB1190 chromosome, complete genome1e-122448BLASTN svgBLASTP svg
NC_015145:2994418*2994418301475220335Arthrobacter phenanthrenivorans Sphe3 chromosome, complete genome5e-116426BLASTN svgBLASTP svg
NC_013159:403918*40391842932125404Saccharomonospora viridis DSM 43017, complete genome5e-104387BLASTN svgBLASTP svg
NC_013159:380014*38001440384023827Saccharomonospora viridis DSM 43017, complete genome3e-96361BLASTN svgBLASTP svg
NC_018681:1021063*1021063104680525743Nocardia brasiliensis ATCC 700358 chromosome, complete genome3e-77297BLASTN svgBLASTP svg
NC_015145:2942500*2942500296157319074Arthrobacter phenanthrenivorans Sphe3 chromosome, complete genome6e-48200BLASTN svgBLASTP svg
NC_007164:2046937*2046937207953432598Corynebacterium jeikeium K411, complete genome9e-47196BLASTN svgBLASTP svg
NC_014246:373247*37324739851625270Mobiluncus curtisii ATCC 43063 chromosome, complete genome1e-39172BLASTN svgBLASTP svg
NC_007164:2068678*2068678209743828761Corynebacterium jeikeium K411, complete genome5e-39170BLASTN svgBLASTP svg
NC_010545:404111*40411143329329183Corynebacterium urealyticum DSM 7109, complete genome8e-38167BLASTN svgBLASTP svg
NC_011896:2240990*2240990227968138692Mycobacterium leprae Br4923, complete genome5e-36161BLASTN svgBLASTP svg
NC_002677:2241065*2241065227975638692Mycobacterium leprae TN, complete genome5e-36161BLASTN svgBLASTP svg
NC_008541:3282415*3282415330766425250Arthrobacter sp. FB24 chromosome 1, complete sequence2e-35159BLASTN svgBLASTP svg
NC_007760:2175992*2175992219609920108Anaeromyxobacter dehalogenans 2CP-C, complete genome3e-34155BLASTN svgBLASTP svg
NC_011891:2264853*2264853228864223790Anaeromyxobacter dehalogenans 2CP-1, complete genome2e-32149BLASTN svgBLASTP svg
NC_011145:2190531*2190531221308322553Anaeromyxobacter sp. K, complete genome2e-32149BLASTN svgBLASTP svg
NC_015673:2206881*2206881223129524415Corynebacterium resistens DSM 45100 chromosome, complete genome2e-29139BLASTN svgBLASTP svg
NC_015711:5761030*5761030577913818109Myxococcus fulvus HW-1 chromosome, complete genome3e-28135BLASTN svgBLASTP svg
NC_013174:650986*65098667158320598Jonesia denitrificans DSM 20603, complete genome4e-24121BLASTN svgBLASTP svg
NC_012560:603447*60344762358120135Azotobacter vinelandii DJ, complete genome2e-20109BLASTN svgBLASTP svg
NC_021150:603447*60344762358120135Azotobacter vinelandii CA6, complete genome2e-20109BLASTN svgBLASTP svg
NC_014218:1485568*1485568150987224305Arcanobacterium haemolyticum DSM 20595 chromosome, complete genome3e-19105BLASTN svgBLASTP svg
NC_013721:276717*27671730391327197Gardnerella vaginalis 409-05, complete genome1e-18103BLASTN svgBLASTP svg
NC_009439:4267356*4267356429048723132Pseudomonas mendocina ymp, complete genome4e-18101BLASTN svgBLASTP svg
NC_002516:4747154*4747154479172444571Pseudomonas aeruginosa PAO1, complete genome4e-18101BLASTN svgBLASTP svg
NC_011206:469901*46990148812718227Acidithiobacillus ferrooxidans ATCC 53993, complete genome6e-1797.6BLASTN svgBLASTP svg
NC_008751:2060391*2060391207813917749Desulfovibrio vulgaris subsp. vulgaris DP4, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_002937:1374532*1374532139596721436Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete2e-1695.6BLASTN svgBLASTP svg
NC_003911:480202*48020249877918578Silicibacter pomeroyi DSS-3, complete genome1e-1593.7BLASTN svgBLASTP svg
NC_008148:2156873*2156873217729320421Rubrobacter xylanophilus DSM 9941, complete genome4e-1591.7BLASTN svgBLASTP svg
NC_003155:62299362299365432631334Streptomyces avermitilis MA-4680, complete genome4e-1591.7BLASTN svgBLASTP svg
NC_009454:316000*31600033359917600Pelotomaculum thermopropionicum SI, complete genome2e-1489.7BLASTN svgBLASTP svg
NC_015556:717993*71799374011322121Pseudomonas fulva 12-X chromosome, complete genome2e-1489.7BLASTN svgBLASTP svg
NC_012490:2067246*2067246208809920854Rhodococcus erythropolis PR4, complete genome4e-1281.8BLASTN svgBLASTP svg
NC_007912:1231436*1231436125527523840Saccharophagus degradans 2-40, complete genome4e-1281.8BLASTN svgBLASTP svg
NC_007517:16766041676604171020033597Geobacter metallireducens GS-15, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_013508:3387272*3387272341154824277Edwardsiella tarda EIB202, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_015437:816719*81671983509918381Selenomonas sputigena ATCC 35185 chromosome, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_002937:1395977*1395977141908123105Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete6e-1177.8BLASTN svgBLASTP svg
NC_014355:1257105*1257105128058723483Candidatus Nitrospira defluvii, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_013216:293571*29357131635022780Desulfotomaculum acetoxidans DSM 771, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_015581:128350*12835015453826189Thioalkalimicrobium cyclicum ALM1 chromosome, complete genome9e-1073.8BLASTN svgBLASTP svg
NC_014958:3094500*3094500311934324844Deinococcus maricopensis DSM 21211 chromosome, complete genome9e-1073.8BLASTN svgBLASTP svg
NC_005085:4499500*4499500451890519406Chromobacterium violaceum ATCC 12472, complete genome9e-1073.8BLASTN svgBLASTP svg
NC_013385:1504650*1504650152847923830Ammonifex degensii KC4, complete genome4e-0971.9BLASTN svgBLASTP svg
NC_012029:1055890*1055890108175025861Halorubrum lacusprofundi ATCC 49239 chromosome 1, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_015380:1066911*1066911109186024950Candidatus Pelagibacter sp. IMCC9063 chromosome, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_011059:18965931896593192809931507Prosthecochloris aestuarii DSM 271, complete genome6e-0867.9BLASTN svgBLASTP svg
NC_007516:347824*34782437119523372Synechococcus sp. CC9605, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_008609:708886*70888674019331308Pelobacter propionicus DSM 2379, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_008726:6393489*6393489643542641938Mycobacterium vanbaalenii PYR-1, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_013922:93809193809195965321563Natrialba magadii ATCC 43099 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_015740:45083754508375452814119767Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, complete9e-0763.9BLASTN svgBLASTP svg
NC_019897:329945*32994537695547011Thermobacillus composti KWC4 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_013730:3208571*3208571324592137351Spirosoma linguale DSM 74, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_000918:1*11826118261Aquifex aeolicus VF5, complete genome3e-0661.9BLASTN svgBLASTP svg