Pre_GI: BLASTP Hits

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Query: NC_003155:6295078:6317639 Streptomyces avermitilis MA-4680, complete genome

Start: 6317639, End: 6318925, Length: 1287

Host Lineage: Streptomyces avermitilis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This strain (ATCC 31267) was isolated and characterized in 1978 by R. Burg and colleagues from a soil sample collected in Shizuoka Prefecture, Japan. Antibiotic-producing bacterium. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This organism is a well known producer of the anti-parasitic agent avermectin which is widely used to rid livestock of worm and insect infestations and to protect large numbers of people from river blindness in sub-Saharan Africa.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013929:6371019:6371019637101963722271209Streptomyces scabiei 87.22 chromosome, complete genomesugar kinase1e-100366
NC_006087:28490:5194651946532291284Leifsonia xyli subsp. xyli str. CTCB07, complete genometranscriptional regulator, ROK family1e-1894.4
NC_014831:1818968:1836995183699518382841290Thermaerobacter marianensis DSM 12885 chromosome, complete genomeROK family protein3e-1790.1
NC_014169:2353711:2355560235556023567651206Bifidobacterium longum subsp. longum JDM301 chromosome, completeROK family protein1e-1481.3
NC_011899:2481229:2483324248332424845141191Halothermothrix orenii H 168, complete genomeROK family protein2e-1480.9
NC_014210:4831858:4847909484790948491261218Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,ROK family protein4e-1479.7
NC_010320:143109:1593611593611605631203Thermoanaerobacter sp. X514 chromosome, complete genomeROK family protein1e-1378.2
NC_014538:187747:1992261992262004281203Thermoanaerobacter sp. X513 chromosome, complete genomeROK family protein1e-1378.2
NC_014550:615609:6267256267256279541230Arthrobacter arilaitensis Re117, complete genomeputative transcriptional regulator3e-1273.6
NC_011661:906583:916539916539917492954Dictyoglomus turgidum DSM 6724, complete genomeN-acylmannosamine kinase3e-1066.6
NC_013739:5705325:5710409571040957116231215Conexibacter woesei DSM 14684, complete genomeROK family protein3e-1066.6
NC_010572:1748668:1754399175439917555981200Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative ROK-family transcriptional regulator8e-1065.5
NC_021177:6662668:6675017667501766762281212Streptomyces fulvissimus DSM 40593, complete genomeROK family protein9e-1065.1
NC_003155:2730469:2736105273610527373041200Streptomyces avermitilis MA-4680, complete genomeROK-family transcriptional regulator2e-0963.9
NC_018750:6315802:6331621633162163328411221Streptomyces venezuelae ATCC 10712, complete genomeN-acetylmannosamine kinase5e-0962.8
NC_003888:6568000:6588242658824265894531212Streptomyces coelicolor A3(2), complete genomeprobable transcriptional repressor protein5e-0962.8
NC_002678:7004370:7026272702627270274381167Mesorhizobium loti MAFF303099, complete genometranscriptional regulator5e-0962.8
NC_011898:3973627:3992304399230439935031200Clostridium cellulolyticum H10, complete genomeROK family protein9e-0962
NC_015183:51500:6543265432666641233Agrobacterium sp. H13-3 chromosome, complete genomeROK family transcriptional regulator1e-0861.2
NC_012914:5938566:5942383594238359435461164Paenibacillus sp. JDR-2, complete genomeROK family protein1e-0861.2
NC_012997:4545875:4544672454467245459041233Teredinibacter turnerae T7901, complete genomeROK family protein5e-0859.3
NC_003062:50756:6485364853660851233Agrobacterium tumefaciens str. C58 chromosome circular, completehypothetical protein6e-0858.9
NC_003304:51048:6505465054662861233Agrobacterium tumefaciens str. C58 chromosome circular, completetranscriptional regulator, ROK family6e-0858.9
NC_009725:1787262:1800029180002918011831155Bacillus amyloliquefaciens FZB42, complete genomeXylR2e-0757.4
NC_020410:1781884:1797417179741717985711155Bacillus amyloliquefaciens subsp. plantarum UCMB5036 completetranscriptional regulator2e-0757.4
NC_019842:1847081:1859562185956218607161155Bacillus amyloliquefaciens subsp. plantarum AS43.3 chromosome,hypothetical protein2e-0757.4
NC_020272:2077795:2101089210108921022431155Bacillus amyloliquefaciens IT-45, complete genomehypothetical protein3e-0757
NC_015519:801929:8051658051658063551191Tepidanaerobacter sp. Re1 chromosome, complete genomeglucokinase4e-0756.6
NC_017188:1567000:1594469159446915956231155Bacillus amyloliquefaciens TA208 chromosome, complete genomenegative transcriptional regulator3e-0756.6
NC_017190:1832402:1847161184716118483151155Bacillus amyloliquefaciens LL3 chromosome, complete genomeXylose repressor3e-0756.6
NC_017191:1568369:1595773159577315969271155Bacillus amyloliquefaciens XH7 chromosome, complete genometranscriptional regulator/sugar kinase3e-0756.6
NC_016047:1978312:1990871199087119920251155Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completexylose repressor4e-0756.2
NC_020244:1875834:1896395189639518975581164Bacillus subtilis XF-1, complete genomexylose repressor4e-0756.2
NC_017195:1852935:1871695187169518728491155Bacillus subtilis subsp. subtilis str. RO-NN-1 chromosome, completexylose repressor5e-0755.8
NC_014479:1831404:1844341184434118454951155Bacillus subtilis subsp. spizizenii str. W23 chromosome, completenegative transcriptional regulator7e-0755.5
NC_002578:877609:883084883084884058975Thermoplasma acidophilum DSM 1728, complete genomeglucose kinase related protein4e-0653.1
NC_013714:2350749:2355017235501723561891173Bifidobacterium dentium Bd1, complete genomeN-acetylglucosamine repressor4e-0652.8
NC_009348:3029963:3033675303367530348891215Aeromonas salmonicida subsp. salmonicida A449, complete genomeN-acetylglucosamine repressor1e-0552