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Query: NC_003155:5443230:5462069 Streptomyces avermitilis MA-4680, complete genome

Start: 5462069, End: 5463505, Length: 1437

Host Lineage: Streptomyces avermitilis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This strain (ATCC 31267) was isolated and characterized in 1978 by R. Burg and colleagues from a soil sample collected in Shizuoka Prefecture, Japan. Antibiotic-producing bacterium. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This organism is a well known producer of the anti-parasitic agent avermectin which is widely used to rid livestock of worm and insect infestations and to protect large numbers of people from river blindness in sub-Saharan Africa.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016582:7737930:7742510774251077440001491Streptomyces bingchenggensis BCW-1 chromosome, complete genomeputative integrin-like protein6e-41168
NC_003155:3652587:3656330365633036577421413Streptomyces avermitilis MA-4680, complete genomehypothetical protein9e-39161
NC_016582:2009588:2021720202172020231951476Streptomyces bingchenggensis BCW-1 chromosome, complete genomeintegrin-like protein2e-35150
NC_003155:3652587:3657810365781036593391530Streptomyces avermitilis MA-4680, complete genomehypothetical protein5e-26119
NC_013960:1258000:1258901125890112607001800Nitrosococcus halophilus Nc4 chromosome, complete genomeFG-GAP repeat protein1e-1585.1
NC_015957:10505870:1052059410520594105219341341Streptomyces violaceusniger Tu 4113 chromosome, complete genomeFG-GAP repeat-containing protein1e-0861.6
NC_014315:1042556:1053842105384210557461905Nitrosococcus watsoni C-113 chromosome, complete genomeFG-GAP repeat-containing protein2e-0861.2
NC_020908:301563:3199543199543224222469Octadecabacter arcticus 238, complete genomeputative integrin alpha chain family protein6e-0859.3
NC_014315:1463383:1476701147670114786231923Nitrosococcus watsoni C-113 chromosome, complete genomeFG-GAP repeat-containing protein2e-0757.8